Array 1 217316-216798 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXL01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3944 NODE_3_length_696328_cov_58.938843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217315 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 217254 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 217193 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 217132 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 217071 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 217010 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 216949 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 216888 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 216827 29 93.1 0 ............TC............... | A [216800] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235183-233630 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXL01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3944 NODE_3_length_696328_cov_58.938843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235182 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 235121 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 235060 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 234999 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 234938 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 234877 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 234816 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 234755 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 234694 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 234633 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 234572 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 234511 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 234450 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 234389 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 234328 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 234267 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 234206 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 234145 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 234084 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 234023 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 233962 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 233901 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 233840 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 233779 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 233718 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 233657 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //