Array 1 50592-51629 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPK01000011.1 Vibrio cholerae strain A12JL4W93 NODE_18_length_64716_cov_40.565563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50592 28 100.0 32 ............................ TTGTTTCGAGCATTCGATAAGGAAATAACATC 50652 28 100.0 32 ............................ GACCGCATTAACCATTTCAAGCCATGCACGAA 50712 28 100.0 32 ............................ AATTCCGTATTCTTCGCGGGGTTGACCGGCGT 50772 28 100.0 32 ............................ TAAAAGTGAGATCACTAAATTGCGGGTTTGTT 50832 28 100.0 32 ............................ ATTACGCTGCAGGTTCGCAAGCTCCGTTTCTT 50892 28 100.0 32 ............................ TTTAGCGAGTGCCGTTTGTGCCAATTTATCAC 50952 28 100.0 32 ............................ TTTTTCTGACTCCAGACCCCCAAACATTTTTT 51012 28 100.0 32 ............................ ATGCCGACACTTCGCCCGCCGTAAGTAACGGT 51072 28 96.4 32 ...........T................ GCAATCAGCAGATAGATCACGCCTGCCTTGGC 51132 28 100.0 32 ............................ AAGCAGCAGACCGAGCAGCAGACCGAGCAGAC 51192 28 100.0 32 ............................ TCAACTGAATTGCTGCTTCATAGTTCGCTTCG 51252 28 100.0 21 ............................ GCGAAAGGTGACTTCCTCAAG Deletion [51301] 51301 28 100.0 32 ............................ GCCCTTCACGAACGGGTCGCCACACTTGCCGC 51361 28 100.0 32 ............................ TGTTGTGTATCGGTCCTGACCGTTCTGATCTT 51421 28 100.0 32 ............................ ATGATGGTTTCCTTTTGGATAGAGTTTTCCCA 51481 28 100.0 32 ............................ GAATTACGATAGTATTTCTGACGCAACTGATA 51541 28 100.0 32 ............................ AAAGCATCTGCTCGTCACGGTCAATCAAGTCT 51601 28 92.9 0 ......................G.A... | T [51621] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 31 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCTTATGGTTGCAGATCTCAAAAGTTGGGATTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCGAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGAGATGCCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGCGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGCATGACTCAAGATGGCCGTGACGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 60274-58746 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPK01000020.1 Vibrio cholerae strain A12JL4W93 NODE_27_length_198370_cov_44.948902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60273 28 100.0 32 ............................ ACAGATCTGGACATCTCTCTCGATATGCTTGG 60213 28 100.0 32 ............................ AAAAACTCAGGTGTATGAGCTTCAAAACCCTT 60153 28 100.0 32 ............................ AGAAAGAAATACTATGTCGCGCTTACGGTAAT 60093 28 100.0 32 ............................ TAGAGAATCATCGGTAGCTAAACCCTATAAGA 60033 28 100.0 32 ............................ ATACAGATTGGCGCAACATTCAAGTGCTTATC 59973 28 100.0 32 ............................ AAGAACAGACACACCGACCAAAGCCACCGCGA 59913 28 100.0 32 ............................ CTTAAGCAATTCCCAAAGCACGAGAAGCACGT 59853 28 100.0 32 ............................ GTTGAAGCCGATGCGCAAGATATCGCGAGCAA 59793 28 100.0 32 ............................ ACCAGAGCTGGCTAGCTTCGAGCGTCAATATT 59733 28 100.0 32 ............................ GACAAGCCTTACTCGATAGATTTTTGCATATC 59673 28 100.0 32 ............................ ATTCAGCAATGCGTCAACAAAAAGCTGTTAAC 59613 28 100.0 32 ............................ AGCTCAGGACAAAGGCGCGCCTTTCCCGTTGC 59553 28 100.0 32 ............................ TTCATCCGTCTCGCTGATTAAACACTGGCGTT 59493 28 100.0 32 ............................ GTAAGTGAGAGATTGACGGAACTGTATGATAA 59433 28 100.0 32 ............................ TTACCCGGCTGAGCACATCGTGTTCCGCTCTC 59373 28 100.0 32 ............................ AAGCAGATCGTCGGTGACATAACATCATCAAT 59313 28 100.0 32 ............................ TTTATCACATAGATTAAGCAGCAATAAAAACT 59253 28 100.0 32 ............................ CGACGCAATGCGCGGCTGATACTCGATCAACG 59193 28 100.0 32 ............................ AAAACAGCGTGTCTTGCGGCCAGAACTCAGCG 59133 28 100.0 32 ............................ ACCAAAGTCGACCACTTGGTTTTTAAACACCA 59073 28 100.0 32 ............................ ACAAACTGGGTTTGTTTGATGCCATCAAGCTG 59013 28 100.0 32 ............................ GCCCATGCCTGCTGGGAAGCGATGCCCCACGA 58953 28 100.0 32 ............................ TATACCAACCATCATGATCTGCCGATTGATAA 58893 28 96.4 32 ...........T................ ATTCGAGGACGAAATCCGCGCAGACAACTGCC 58833 28 100.0 32 ............................ AAACTCATCACGACCAGAGGATTCCGTCTCTT 58773 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGTCAGCGTTGTGTAACTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCCCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28983-27428 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPK01000012.1 Vibrio cholerae strain A12JL4W93 NODE_19_length_70430_cov_51.112610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28982 28 100.0 33 ............................ CCCCTGTTGGTGGTATGTTTCCGATTGTCGCAA 28921 28 100.0 33 ............................ CATGAACATCGCAAAATTGCTAGCAACTGAATG 28860 28 100.0 33 ............................ TAGAACCATTAGGACGATTGACTTTTTCATATA 28799 28 100.0 33 ............................ CAATCATGATCGATCGTTCGGTATCTTCAACGT 28738 28 100.0 33 ............................ TAGAGCGAGAATCTGTGATAGCGTGACGTGTTC 28677 28 100.0 33 ............................ TACTTAGCGTAGCAACTGCGCCGCCGCTTGGCA 28616 28 100.0 33 ............................ TCCACCTTGTGGCTCTATGCCTTTTCTCGCATC 28555 28 100.0 33 ............................ CACATGGCCATACAGCACGACAGCGGCCACATT 28494 28 100.0 33 ............................ CGATGCGATGATTTGGCCCTAGCTGACGATTCA 28433 28 100.0 33 ............................ TAACCCCAAAAAAAGAAAAGCGTTCGAGTGCAT 28372 28 100.0 33 ............................ TCGAGAAGTTGGTACGTTAAAACAAAGTGAAAC 28311 28 100.0 33 ............................ TTATGGGTAGCAAAAAAACAGGCATAGCCATAA 28250 28 100.0 33 ............................ CGAGATGATTTTTGCCTACATCCCAAACCTTGA 28189 28 100.0 34 ............................ CCACCTACGGTTCGGCGCATCGTTACATTAAAAA 28127 28 100.0 33 ............................ TCACAAGCGATTGAAGCAGGAAGAAAGGCGGGA 28066 28 100.0 33 ............................ TCTAATACCGTTTGCTACGTCGAGGATGACCCT 28005 28 100.0 33 ............................ TGTCACGCTTCATGGTGCCGCCGATGCCCGCCC 27944 28 100.0 33 ............................ CCCTCCAAGCCACTAGCGGCTCAAGCTCAACCG 27883 28 100.0 33 ............................ CTGTGTGTTGATTGAAAAAGGACGCTCAAAAGT 27822 28 100.0 33 ............................ CAACCGATTTGACGACATGCCGCACGCCAGTGA 27761 28 100.0 33 ............................ CAAACGCACCGGAGAGGTGGAAGTGTTGCCCGA 27700 28 100.0 33 ............................ CAAAAAGCCGAGTTGGATAACCGCATTATTCCC 27639 28 100.0 33 ............................ TAAGCATATTCAGCCTTTAGCTATCCATAATTC 27578 28 100.0 33 ............................ TGACGGGACCGACCCCTTGCCCTTTGATGAGCA 27517 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA G [27495] 27455 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 26 28 98.9 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //