Array 1 229051-230422 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFP01000001.1 Salmonella enterica subsp. enterica serovar Ohio strain 2011K-0797 NODE_1_length_365634_cov_4.16642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229051 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 229112 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 229173 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 229234 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 229295 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 229356 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 229417 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 229478 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 229539 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 229600 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 229661 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 229722 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 229783 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 229845 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 229906 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 229967 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 230028 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 230089 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 230150 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 230211 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 230272 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 230333 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 230394 28 93.1 0 ............T..........-..... | G [230411] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 246709-248203 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFP01000001.1 Salmonella enterica subsp. enterica serovar Ohio strain 2011K-0797 NODE_1_length_365634_cov_4.16642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246709 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 246770 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 246831 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 246892 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 246953 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 247014 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 247075 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 247136 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 247197 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 247258 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 247319 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 247380 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 247442 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 247503 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 247564 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 247625 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 247686 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 247747 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 247808 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 247869 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 247930 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 247991 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 248052 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 248113 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 248174 29 96.6 0 ............T................ | A [248201] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //