Array 1 106418-107421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUC01000012.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N29362 N29362_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106418 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 106479 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 106540 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 106601 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 106662 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 106723 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 106784 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 106845 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 106906 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 106967 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 107028 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 107089 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 107150 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 107211 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 107272 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 107333 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 107394 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123679-125342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUC01000012.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N29362 N29362_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 123679 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 123740 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 123801 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 123862 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 123929 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 123990 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 124051 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 124112 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 124173 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 124234 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 124295 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 124356 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 124417 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 124478 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 124539 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 124600 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 124661 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 124722 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 124783 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 124886 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 124947 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 125008 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 125069 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 125130 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 125191 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 125252 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 125313 29 96.6 0 A............................ | A [125339] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //