Array 1 30824-32245 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQDJ01000005.1 Neisseria meningitidis strain M38524 M38524_CHA4474A20_cleaned_ctg_9985, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30824 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 30890 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 30956 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 31022 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 31088 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 31154 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 31220 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 31286 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 31352 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 31418 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 31484 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31550 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 31616 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 31682 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 31748 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 31814 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31880 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 31946 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 32012 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 32078 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 32144 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 32210 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //