Array 1 166557-166406 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000012.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166556 29 100.0 32 ............................. ACGTACACGCCCAGGTGGCGCGGGTCCATCTC 166495 29 100.0 32 ............................. ATTCCTCGGGCGGCGACCATTCCCGCTTTCGC 166434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : ACCCTGCCTCAACTCCTGGACCTGTTCCAACGTCCGGCCAGTCTCGTCCTCGGCGTGGGCGGAACTCTGCTGCTGACCGTGGCCTTCGTGCTGTGCCTGCACTTCTCGGTCCTGGCCTTCGCCGGGCCCGGAGTGGAGGTGAGCCTGGTCGCGGTGGCCGTGGTCTTCCTCGCTGGAAACGCCATCGGTTCGGCCGCCCCCACCCCGGGCGGCCTCGGTGCGGTCGAGGCCGCGCTGATCGGCGGGCTCACCACGCTCACCGCGATGCCCGCCGACGTGGCCCTGCCCGCTGTCCTGCTGTTCCGGGTGCTCACCTTCTGGTTCCCGGTCCTGCCCGGCTGGGCTGCCTTCAGCTATCTGCAACGCCGCGAGGCCATCTGAGCCCTCAGCGATCGGGGAGCTGGTTCGGCCGTGTCGATGTGTGTCAGGATGTGTGCCAGAGGACGCCGGTGCGATGATCAAGCGAAGATGACGGCTCGCGTTGCCGCAGGTCGTTAAGT # Right flank : CTGTCCTAGGAAGGGCGGCGGGACGGCCTGGAACGAATCCCGCGGAGCCCGACGACGAAAACCGCCCCGTGCCAACTCAGCACGGGGTGAGAGAAGATTCCTCTGCAACTCAACGAATCTACGACGTAAAGGTCGCGACTTCAGTGTTGGTTATCGCGCCACCCCTTGCACGGCCTACCATCATGGGCATGCTTCGCCGGGCGAAACGTGGAGGTCTGGGGAACCCACTTATCGCAGGCCAGGCAGCGCATTTTTCCTCCACGCCGTTTCTTGGACTCGCTGATGGTCCGGTAGTTCGGCACGGCTCCTTGGTCGGAGGATCCTCGGCATTCCAACAGTGCGTAGGAGAGCAGCGCCCAGGCGCTCGTCTCGTTGATGTAGTGCTTCTTTCGGCGGCCGTCGGCCCGCGCGCCTATCCGGCGCTCGCAGTACGGACACACTCCGGGGGTGGTCATCCGTGCCTCCTCGTCAGCGGTTGAGAGCGGCTGCCAGGATCACCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 329295-329021 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000002.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 329294 30 96.7 31 .............................C TGATCGGCATCTATCAGCGTCTGTCTGCGGA 329233 30 96.7 31 .............................G AGCAGGTGAACGAACACGGGATCTCCTTACG 329172 30 100.0 31 .............................. GCGTTGGCACCCTGGCCGACAACCCCGCCGA 329111 30 100.0 31 .............................. TGGCGCCGGACACCGTGCCGAACAGGGATGC 329050 30 93.3 0 ..............C.............T. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 97.3 31 GTGCTCCCCGCGCATGCGGGGATGGGTCCA # Left flank : CACGGAGAGTGAACCCGCCCAGCCCACTCAGGGTGCGGGGGTCGCGCTGGCGACGACCCGCTCCACCGGAACCGGAGCGGCGGTGGTCACCGCCCTCGCCCTCACCTGGCTGAACCCGCACGTGTACCTGGACACCGTGTTGTTCCTCGGTTCGGTCGCCAGCCAGCAGGTCGGCGAGGCTCGCTGGTGGTGGGCGGGCGGTGCGGTCACCGGAAGCTTCGTGTGGTTCTTCGCCCTGGGCTTCGGTGCCCGGCTGCTCCGCCCGGTCTTCGCGAAGCCCGGAGCCTGGCGGGTGCTCGACGGCATCATCGCCGTCGTCATGCTCACCCTGGGCCTCCGCCTTGCCCTGGGCGGCTGACCCGAAGATCGGTAGCCTGCTCTGGTGAGCGGGAGAGAGGCCCCTGTGTGGGTTCCCTTTGGGGTGTTTGTCTTCGGAGTCTGTTTCTCGACAAGTTGTAGATTTCGCTGGTTCCGCGCTCTGGAACCGCAGGTCAACGAGT # Right flank : GGTCGGGGGAGTGGGTCACTCCGTCGCTCGGGGCAGGCTGGTGCGGCTGCTCGGCGAGCTGGACTCTGCGCCCGAATCCCGCGCAGCTCGACGCGCTCGACCGGCTGGCGTAGTACTAAGAATCTACGTAGTAAAGGTGGGGGAGCGCCCCGTCAGGAGAGCGCTCCCCGGTACTCAGGATCCTTGGTAGGTGGCGTGGTCGAAGTCGGCGTGACAACCCGTGCCGGTCAGGTCCTGGACCCACAGACCCAGGAACGCGCCCGTGAAGCCCCAGATGGTCGCCGTCTCACCGTCGCTCTCTGCGGCGTAGTCGTCGGACAGGATGCTGGCGTCCAGGACCCCGCCGACGGGCGTCCAGTCCTGGCCATCGGGGGAGAGGGCGAACCGCAGTGCGGCTCCGTCGATCTCCGCGCGCAGGTGAAACCGCTCCCAGCCCCGCACGTCGACCCGGTCCCCGGACTCGCACACCCGTCCCCGGTCGGAGCTGAGCACACCGGCGA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGGTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 218-674 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000001.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 218 30 100.0 31 .............................. CCAGGCCCTGACGACGGAAGATCCTCTCAAC 279 30 100.0 31 .............................. AGCGGGCACCACGTGGGAAGGCCAGGCCTTC 340 30 96.7 31 .............................C CAAGCGTCACAGATGGAGGTCGTCGTTGCGG 401 30 100.0 31 .............................. TGCCGTTGGGCTTGAACTCGAACAGCGGCTG 462 30 96.7 31 .............................A GAGCGTTCGGTGAGGTGTGTAGGACGTCACT 523 30 96.7 31 .............................C TCGCGGAGGCCGGCCACCACCCCAGAGTCGT 584 30 93.3 31 ...........A.................T GATCATCCGGCAGCGGGCCGAGGCCCGCGCG 645 30 90.0 0 .........................CT..T | ========== ====== ====== ====== ============================== =============================== ================== 8 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CAGTCCTGGTCCCGCGCTCTCCTTCGCTGCCGCTGTTGCGTCGGGAAGCGTGACCGGCCGCGACACGAATCCCGGTCAGCGCAGGCATGGAGAAACACATCGCTGTGGCCGTAGGCTCACCCATGACAGCAACGACGAAGGTGGATGTCGGTTTTGTCTGTTTCTCGACAAGTTGGAAAAACGAGCGCTTGCCACCGGTAAGTTCCCAGGTGAAAAAC # Right flank : TGCTCAGTTCAGAAGGACAGGAGTACAGCTACCCCAAGGGCGGGGAAGGGCCATGCAACGCTGGCGGGAGCCGCAGGGTTGCGGCTCCCGCCGATGGGTCAGCGGTCCTCTTCTTCTTCGAAGAGGCGGATGGCCGGGGGCTCGGTGTCCGTCGGAGGGACCTTCATGGTCTTGAGGGCGAAGGACATGATGTCGTTGAACACCGGTCCTGCGGCCTCGCCGCCGTAGTAGGTCTCCTGCGGGTTATGCAGGACCACCTGGACGATGAGCTCGGGGTTGTCCGCCGGGGCGAAGCCCGCGAAGGTCGCCGTGTAGCCACCGCCGTCGTAGCCGCCTGTCTCCGGGTTGATCCGGTTGGCGGTACCGGTCTTGCCCGCTACCCGGTAGCCGTCGATGCGGGCCTGGGGCGCGGTGCCCTCGTCGCTGGTGACGGCTTCGAGCATCAGGGCGAGCTGGTCGGCGGTCTCCTTGCTGACGACCCTGGTCTTCTCCGGCTCCTC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269783-270484 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000001.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 269783 30 93.3 31 ..............T......A........ GCGATATGGCGCGGTCGGGGCGCGTCCTCAG 269844 30 90.0 31 ..............T......A.......A GGCAGCTCTTTGCCCTTACATCGCAGTTCAG 269905 30 93.3 31 ...............A.............G TGGCCTCGTCCTGCAACCGGCTCGCGGCGCG 269966 30 100.0 31 .............................. GTCCGGTGCGGATGAGGTCTCATCCGTCCCG 270027 30 100.0 31 .............................. CGTCAGTCCGTTCCCTCGCTGCTGATGGTCG 270088 30 96.7 31 .............................G AGGGCCCGCCGGACCCACCGGCCAGACGCCA 270149 30 93.3 31 ................T............G CGTGCATCAACCCAGGTGGCAAGCTCGTCTG 270210 30 96.7 32 .............................A CGACGGTGTCCATGGTGAGAGTGCCCTCGTCG 270272 30 96.7 31 .............................G GGCCCTGATCAACGGCCTTCTCGCTCTCGCA 270333 30 100.0 31 .............................. CGGCGACGCCTTCGCCGATCGGCGGGGTGGT 270394 30 93.3 31 .....................A.......T CGCAGGAGCTGGACACCGCCCCGAACGTGCG 270455 30 90.0 0 .....................A......GT | ========== ====== ====== ====== ============================== ================================ ================== 12 30 95.3 31 GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : TTCGAGATCTCCGAGGAGATGATCGCGCTCGCCCGCCAAAACGTTCCCGAGGCGAGGTTCCGCCGAGCCGACATCGTCGACCTGGACCCGGTGGAGTGCTCGTACGACGCCATCGTGGCGTTCTTCTCGCTGCTCTGCCTGCCCAAGGAGCGAATCCCGCAGGCCCTGGGCCGCGTGCGCGCCTCGCTGGTGCCCGGCGGCCTGGTGTGCCTGTCGATGGTCGAGGCAGACCTGGACGACCAGCCCATCTCCTTCCTGGGAAACGAGATCCGGGTGTCCGGCTACCCCCGTGACGAACTGAGAGAGGTCGTGGAGCGGGCCGGGCTCATCATTGAGGACGAGCGCGTGGTCTCCTACAACCCCGACGGCGCCCACCCCGAGGTGCAGATCTTCCTCACCTGCCGCCGAGGCGCGTAGCCGCAAGGAAGGTGGAAATGTCCGTTTCTCGGGAAGTTGGAAAAATGGACCCTTGCCACCGGTAAGTTCCCAGGTGAAAGAGT # Right flank : TCGACGTAGTTGGACAGGACGACGTGGGTGGCGGTGCGCCCTGCGGGGACGGGACATGACTGAGGGGGACCGCCTTCGTGGCGGTCCCCCTCATTGGTCAGATGGCTAGTCCAGGCCCAGGATCGGCTCCAGGCCCAGGGTGAGGGCCTCGGGAAGCTCCGCGGTCCTGCGGATACCGAGGAGGACTCCGGGCATGAACGAGGTGCGGTTCATCGAGTCGTGGCGGATCTTCAGGGTCTCGCCGTCGGTGCCGAACACGACTTCCTGGTGGGCGATGAGGCCCTGGATGCGCAGGGCGTGCACGCGGACGCCCTCGATGTCCGCGCCACGGGCCCCGGGGATCTCCGAGGTGGTGGCGTCGGGCATCGGCTGGGTCCCGGCCTCACGGCGAGCCTCAGCGACGAGCTCGGCGGTCCGGTAGGCGGTGCCGCTGGGGGCGTCGGCCTTGTTCGGGTGGTGCAGCTCGATGATCTCCGTGGAGTCGAAGTAGGGCGCGGCCT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 291011-291222 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000001.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291011 29 100.0 32 ............................. CCTTTCCGTCGATGAGGTAGCCCTGTGGTTCG 291072 29 100.0 32 ............................. CCTTGCTGGAACAGGCTGATTTGCTGGGTCGC 291133 29 100.0 32 ............................. GGCCGCCGGGTGAGCGTGGCGTGTCAGTGCGA 291194 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GCCGCGCTGGACCCCACCGACACGCACCCCTGTGATTTGCTCCCCGACGCCACCGCCGTCGAACTCGGCATCCTGGACGAGGAGGGCGAGGGCAGCCCCCAGTCCGACGCCAACTGCTTCTACACGAACCGAGTTGATGCCAGCGTGGACCTCCGCGTGGAGGTTCATGAGGAGAAGGACGCCGTCGAGTCCACAGTCTCCGCTGCTTTCTCTGGCGCCGACGACCAGGAGTTCGCCAGCGTGGAGGGGTATCCGGGCGTGACCACGGAGTTCCCGGACTCCTGCAACCTCACCGTGGCCGTTTCCGATGAGCACTCGTTCTACGTGCAGGTGAGTGCCGACGAGGCGTGCGAGGTGGCTGTCGAGGTGGCACGCACCGCGATCACCAACGCCCAGGACGCCTGATACCGGGCCTCGGGTTCTGTCATCCTGTGCCCGGGAGTGGATCAATTCAAAGGTCAAGCGGAGATAACGGCCCACGTTTCCGCAGGTCGTGAACT # Right flank : GCACCTCGTCGTGGGCGCCCCGACCTGCCAGTACGCTCCGCACACGACGAAGCTGTGCGGAGCGGCGACGTCCAGATCAAAGCAGATCGGTGGACTCTCCCGCGACTCGTGCTCGCACGATGTCCCTGTAGGGCAGTGTCACGACAGGAAAGGCCTCCAAGCCAAGGGCGGTTCCACCCCAGCGAGCGGTCGAGGCCTGGTGGCATCATCTCCGAGGACTTGACCTCCACGAACACCCCCGCACTCGCCACGGTGTCGTTGGCGACCGGGGTGTGGTCCCGGTCCGGGTGCCGCCGGACGGAGCGAGCCTTGTCGCCGTGGGCACCAGCCTCTTGATCTTTCACGGTCGCGGCTCTCCGCTCTCCTCCATGCGGCCACGCGAGGGGGGCGACTTTCCGGCCGAGATCGCCAGACTCCCACCTGACGTCCGTGCGGCGCGATGCCGTCGAGCCCTACCGCTCGCGTGGCCGTGCGGGTGCGACCCGGCCTTCAGCGCCCGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 220-800 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000013.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 220 30 96.7 32 .............................C AAACTCCCGCGCGCCTGGTGGCCACTCCTGGG 282 30 96.7 32 .............................C GGTCGATCTCCGGCATCCCGAGAGGCTTGGTG 344 30 96.7 31 .............................C CGTGACAGGTCAAGCACCCACAGGCGTCCAT 405 30 100.0 31 .............................. CGGCTTCGATGAACCACGCCGTGCCGTAGCT 466 30 100.0 31 .............................. CGGCTTCGATGAACCACGCCGTGCCGTAGCT 527 30 96.7 31 .............................G CCCAGGTCGAACGACCCGGGCGTCACGGCGA 588 30 96.7 32 .............................G TGCCGTCGCGCACCATGGAGTACGCCCGGTCG 650 30 100.0 31 .............................. CCCACTTCTCCCCTGCCGCGTGGAGCGCTTC 711 30 96.7 31 .............................A GCCGCAAGCTCAACAAGGACACCCAGCAGTG 772 29 83.3 0 .................-.....A.TG.G. | ========== ====== ====== ====== ============================== ================================ ================== 10 30 96.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : CAGTCCTGGTCCCGCGCTCTCCTTCGCTGCCGCTGTTGCGTCGGGAAGCGTGACCGGCCGCGACACGAATCCCGGTCAGCGCAGGCATGGAGAAAAACATCGCTGTGGCCGTAGGCTCACCCGTGACAGCAACGACGAAGGTGGATGTCGGTTTTGTCTGTTTCTCGACAAGTTGGAAAAACGAGCGCTTGCCACCGGTAAGTTCGCAGGTGAAAAAGTC # Right flank : TTGGCTAGGGGAATGACGCGAGCACTCGGGAAAGGGCCTTCTCACCTGCTGGTTTCCAGGTGGGTTTGCCTCCTGGGAGGCCCTGTTCACCGGCACGGCCTATCTCGATGAGGCCGAGGCTCCGAAGGACGGCCCAGCCTCGTGAGCGTTGGATGGTGGCCTCGTCGGTGGGGTATCCGGCGAAGAACTCGGTGGCGTTGGGGAGCAGGACCCACGCGGCACAGAGATCCGTGGCGGGATCACCTGAGCAGAGTTCGCCGAAGTCCACGACACCCGTGAGGGCTCCGTTGGTGGTGACGACGTTGGCCGGGTGCAGGTCCGCGTGCAGCCACACCGGGGCGTGGTGCCAGTGGGGTGCGTCAGTTGCGGCCTGCCAGACCTCCAGGATTCGGGGAATCTGGTCGGGGTCCGCGGTGCTACGGGCGTACCGCTCGAAGGCATCGAGGTCCTCGATGAGGTCGAGCGGGTGCATGCCGCGCTGGGGGTTGACCGGGGCGTCG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60436-60768 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000013.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60436 29 100.0 32 ............................. CCATGGGCCAGCTCCGCCAGGGCCTGGCCCCG 60497 29 100.0 31 ............................. CAGGGACACGTCCACTCGTGGTGGATCGTGA 60557 29 100.0 32 ............................. CGCAGCATCCCGGGGTGGAAGGGCTGGACCTG 60618 29 100.0 32 ............................. GAATGCGCACCGAAATCACCTGGGAAATGCCC 60679 29 100.0 32 ............................. AAGGCCGGGCTGGTGACCGTCCACACCTCATC 60740 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCCTGGTCGACGGCCAGGGAAGAGCCGCTGGTACCTGCCCGCACCATCCGACCGTGCGCAACACCCCCGGCGGTACTTGCGTGATCTGCGGACGGCTCTGCCGCTCGGTGCCCGACGAACTCGTGCACGAGCCGAAGCCGAAGCCCGCCGTCGATCCGGACGCAGCCTCCCCGGCGGTGCAGCAGGCCGCCCTGGACCCGAAGCTGTGGGAGCGGATGACCGCCTCACTCGGTGAAGGTGGCCTTTCCCGGGTTCCGTCGCTGCATGACGGCCCCCGAAAGCACTTCGGATCCGGAATCTCCCCCAGAAGCAGGACCGTTATCGACAACGCACGCCATCGGCTGCGAGGTCAGAGCACTCCGGAGAGGTCGTCGCTTCGGCAGTCGAGCGGACGGCGACTCGTCAGGGCGTGACAGGACGGCGGTTGCCGTGCTGCTTTCCACATCTCGCCCCAGAGATAACGCGGGGATCACGCCTCGCGTTTGTGCAGGTAATTTGCC # Right flank : GCACTTTCTCAGTACACACAGATGACCACCCCCGGCCTGGCGCTGACCTCGGCTTCTTGCTCCAGGAGTGGTCTGACCTGCGGCATAGATTGGACGCGTCGAGTGGGGGAGGGGAGCCGGTGATGACGGAGACGACGGTGGACGAGGTGATGGCCGAGCTGGCCGGGCTGGAGGACGCCCGGATCCGTGAGGTGAACGCGCGGCACGGCGACGACCACGGGGTGAACCTGGGCAAGCTGCGCGCCGTAGCCAAACGGCTGGGGAAGCAGCAGGACCTCGCGGTGGAGCTCTGGGAGACGGGGGACAGTTCGGCTCGGCTGTTGGCGCTGCTGATCTGTCGGCCCAGGGAGTTCGGCCGCGACCAGCTGGACGTGATGCTGCGCGGGGCCCGCACCCCCAAGGCGCACGACTGGCTGGTGAACTACGTGGTCAAGAAGGGGCCGCATGCTGAGGAGCTGCGCCTGACCTGGTTCGACGATCCGGATCCGGTGGTCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 121207-120690 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000015.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121206 29 96.6 32 .....T....................... TCCAGCTGGCCGTCGGGGGCCCACCGGATGAT 121145 29 100.0 32 ............................. ACGACCGTCATGTCCTATGACTCAGAGCGCCA 121084 29 100.0 32 ............................. GTGCGGCGCCCGGCCCGGTCAGGAGGAGGGAT 121023 29 100.0 32 ............................. AACGTGCGCTGACCGTACGAGCAGTAACCCGC 120962 29 100.0 32 ............................. CACAAGAACACCGAGGCGCTGAAGGGCAAGGG 120901 29 100.0 32 ............................. AGCACCCCGGCGGCCACGGTGGGGATGATCGC 120840 29 100.0 32 ............................. GGTTCCTGGGAGATCGCCCGCATCGATCCCCA 120779 29 100.0 32 ............................. GCCGCACCTACCGGTGGATCACCCCCCAAGGA 120718 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTAGGCCCCGCGCACGCGGGGATGGACCG # Left flank : ATGTAGGTGCTGGGGGTGATCGCGGGGTCGAAGGCGGGCGCTTCGGCGCGGATCGTCTCCCACCACGCCCGCGGCACGGGCGGGTTGACCCAGCCGGAGGGGTCGGTGTTGCCCATGGTCTGGGTGGGAACCACGAGGTTCCCAGCAGGCCCCACCGCGTCCAGCAGCGCCTGGACCACGGCCTGGTCGGCCCCGCACACCCACCCGAGGGAGCGCAGTGAGGTGTGGACCAGGAGTGTGTCACCAGGGCGCACCCCCAGGTGCGCCAGGTGCACGGTGAGTGAGGCCGCCGTACGCGGCCCGTCCGAGAGGTAAGGGGGAGTGGACACGAGGGCGCTCCGGTGCTGGTGGACACTTCGGGTCATTTTCCAGCGCGAAGGTCCGCCAGGCCAGTCAGTTTCGCTCTCGGGCCCTCTCTGCCATGATGCGACTCCCGGAACGCCTGCCGATGCGATTGTCAAGCGGAGATAACGGCTCGCGTTCCCGCAGGTCGCGAAGTG # Right flank : GGGTAAGGGGCTTGCCCCCATCCGCCTCGACGACCCCCCGATACGCGGGAGCTGGCGGGGACCTGGCTAGTCCAGGACTCGCATGACGAGCCCCGTGCGGGGTTTGGGGCCGAAGGACGTGGACTTGCGGGGGGTGAGTTCGCCCCGGTCGGCGACGGCGTAGACCTGCTCCACGCGCAGCGGGGGCACGATCACCGCAGTGCCCTTCTCGTCGCGGGCGGCGGCCTCGGCCTCGGCCGGGTCGTCATGGACCATCCGCACGTGTTCCTCGGGGAAGTGCCACAGGGGCAGGAGCACCTCGTGCAGGGCGGCCGTGGCCAGGTGGCGCCAGTCGGGGGAGCGGTCGGGCATGGCCCGTTGGAGCACGGCCTCGTCGAATCCGCTCACCAGGTGGGCCTCGCCCTCGGCTGACACCAGGAGCAGGGCCGGGGCCTGCGCGTCCTCCAGGAGCGCGGGGTCTGCTTCGGTGACCGGCTCCACCCGGGCCACGGTTCGGGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 364257-363802 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000003.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 364256 29 100.0 32 ............................. CGAACGTCGGGCAGCGGGCTCGTTCGGCGTGA 364195 29 100.0 32 ............................. CCGATGGCCTCGATGGCGCACGCTCGCCTGCC 364134 29 100.0 32 ............................. CCGCCACCGGCCGCTTCCGTGGCGCCATCCCC 364073 29 100.0 32 ............................. AGACTCCTACCGAAGTCGCACAGGACCACCCT 364012 29 100.0 31 ............................. CCCGTGACTCTGCTCGGCAACGCCGAGTACA 363952 29 100.0 32 ............................. GCCACATGCCCGCCCCGGACTACCCGCTCCCC 363891 29 96.6 32 ...............A............. CGCTGCTGCGGCACCTCCGTCGGCGTCATCAT 363830 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGACCGGGCCTCCAAGGGACTGGGGATGCGCCTGGTCGAGGCCCGCGACGGGTACGCGGTGGTGGAGATGGTCGTGGGGCCCCTGATGCTCAACGGCTACGACATCACCCACGGCGGGTTCGTGTTCGCCCTGGCTGACACCGCCTTCGCCTGCGCGTGCAACCTGGACGGCGGCGACGTCACGGTGGCTTCGGGCGCGGACGTGACCTTCGTGGCCCCCACCAAGGAGGGGGATCTCCTGGTGGCGACCGCCGAGGAGAGGGTTCGGTTCGGGCGCAGCGGCGTCTACGACGTCACGGTCCGTCGGGGTGACCAGGTTGTCGCGGAGTTCCGGGGGCGCAGCAGGAGCCTGCCGCAGAAGAGTTGATGGGTGTGGGGCTGGGGTTCGAGGCTGGGGACTGAGGGTTTCACGGCCCCGGCCTCTGACATCATGTGCACTAGATGTGTGGCTGTGAAGGTCAAGCGGAGATAACGGCCCGCGTTGTCGCAGGTCATTAAGC # Right flank : GTGGCCCACTACAAGGACCGGGTCCGCAGTCGATGGACTATTTGGCCCGCGGGCCCAGGTCCGAGACGACCAGAGAGCTACAGAAGACGCTTAACTCCGGGAAGTGTTGAGCCGATGGGTGCGGCCCGGTACCCCCAGGGCGCCGGGCCGCTCGCGCTGTTTTCTGGGCGCCCAGTCCGTCCCGTGGTCATCTCCAGCGTGTGGAACTCAACCTGGGGCATCGATGGTGAACGGTAGTTGGCAATTCGTGGGCGAGTGACCTTCTGGTCCTGTGCAGCGAATCCTCACGGACGCCCCTTTCCCTTGGCGAATTGATCAACTATGAAGCACTCGATCACGCTTTGTTCTCGACCAAATACGCCCCATCAGTCATTGGTGGTTTTCGTGGTTACCTCGGGGTCATGACAGGAGGGCTGCCAAGAGCAGCGGAGGAGACCCCTCTCCAACCAGGACATCCCCTTGGATACTTCAGAAAGGCGGCAGAGTGAAGAACGCGAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 206520-207281 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000004.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 206520 30 100.0 31 .............................. GCAGTCCAGAGGGCGTGCTTTTTGGCGGGGG 206581 30 96.7 31 .............................G GCGTCCGCCCGAACCGTTTCGCTGGCTCGGG 206642 30 100.0 31 .............................. TCATCGGCCTGGCCGTCGGGGTCGGTGCGCT 206703 30 96.7 31 .............................G GGACACCGGTCTACACGGTGACCGACTTCAA 206764 30 96.7 31 .............................G GCACCGGGCCGGAGGCGGCACCGACAGTCAC 206825 30 93.3 31 ................T............G CGTAGAAGTGGTGCATCGGGTTGTTCCTTTC 206886 30 100.0 31 .............................. AAGGCCGCCAAAGGCCGTCCCTCAGTAGGAT 206947 30 100.0 31 .............................. GCCAAAAAGACATTGAGACGATCTCGATGGA 207008 30 100.0 31 .............................. CCAACCCCTGGAACGCCAGCGACCGCCAGCA 207069 30 100.0 31 .............................. CCAGATCGGGGGTGCTCCTCTGCTGTGCCTG 207130 30 96.7 31 .............................C AACACCGACGGCGCCGCCGGAATGGGTTCCT 207191 30 100.0 31 .............................. TCGTCGGAGAATTCAGCGACAACGACCAGTC 207252 30 93.3 0 ...........A.................C | ========== ====== ====== ====== ============================== =============================== ================== 13 30 98.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCA # Left flank : CTACCACCTGACCGCCTTCGTGGGTCCGGAACTCCCCGACGTGCTGGCTCTCGCGGACGTGGTGGTCTCCCGAAGCGGCGCCGGAACCATCGCCGAACTCACCGCCCTGGGCAAGGCCGCGGTCTTCATCCCGCTGGCCTCCTCCGCCGGGAACGAGCAGGCGCACAACGCCCGCCACCTCCAGGAGTCCGGGGCGGCCGTCGCCCTCCTCGGCGAGGTCAACCCCGCGAACCTCCAGGCGGCGGTGGAGCCTTTGCTCGCCGACCCGGCCACCCGTAACGCCATCGCTTCCCAGGCCCGCTCCAAGGGCATGCCTGACGCCGCCGAACGCCTCGTGGACGTCCTTATCGCCGCCGCCAACTGATCCCGGAGCCACCTTCACGGAGATGGCTCCATTCGTGTCACGGAATCATTTATGGCCAGGGAAATCACCAGTGTCCAACTTTCGAGAAGTTGGAAAAACGACCCCTTGCCACTGGTAAGTTCCCTGGTCATGAAGT # Right flank : CCCACAACAAGACCGACTCGGAAGGGCTGCTGCCTGCCCCCGCGCAAGCGGTCACGGCCTTCTGGTTGCGCTCTGTAGTGCCTTGTGTTCGAAATGGGGGACTCAGTACCACAAGTGTCTCGTTGTTGTCAGAGAACCAGTCGACAGGCGGATGGCCACATTAGGTCGAAACGATTGTTCGGTTTTTGACGTGGGTTGTCGTTGGCAGGCATTTAGATAGCTGCCATGACCTCCGTTACCCCTCCCCAGCCATGGAGGGACGGCCTCTCCGAGGCTGCCCGCAGCGTGTGGGCCAAACACGACTTCGACTCCGACGGCTGGCTGCCGCTCTACCGGCACATGGCCGACAGCGCCTTCGTCGCGGCCAGTCTCTGGGATGAGTGGCTTCCCCCGCAGGTGCGCGGTCTCATCGCGTCGGTGCTTCCCCACGGCGAGGGCGATGCCCGCCTGCTCGCGGTCTGGCTCGCGGCCACCCACGACATCGGCAAGGCCACCCCTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 217091-217669 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000004.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 217091 30 96.7 31 .............................T CGTCCCCGTCCGGCGACACCCACACCAGCCT 217152 30 100.0 31 .............................. TTATGCGGCGCGTGATTCGAGTGCACAATAA 217213 30 96.7 31 .............................A GGGTGGTGGCTCCGGCTCCGGCTCCGGCCAG 217274 30 100.0 31 .............................. TTGACACAAAAAAATCTTGGCACGCCCAACC 217335 30 100.0 31 .............................. CTTTGCGTCTACGCACGAATCCGTGATGACA 217396 30 96.7 31 .............................A CGAGGCGGCCGCCGGGGGTGGTGGTGTCCAG 217457 30 96.7 31 .............................G CCGTCCGCCGCGACCTCTGACCACCCCGGCT 217518 30 100.0 31 .............................. CAAATCATTTACTACACGGACGAGGAGGCAC 217579 30 96.7 31 .............................G GCTGTGAGGAGCCACGGGTCGAGCGCTCTCT 217640 30 80.0 0 ..A...........T..T......A..TG. | ========== ====== ====== ====== ============================== =============================== ================== 10 30 96.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : TGGTGAACAGCTGTTGGAGGCTGGACGGCATCATCCGGACGAGGTGGTGTGGTGACCGTCATCGTTTTGGCCAAGTGCCCCAAGGGATTGAGGGGGTTCCTGAGCCGCTGGCTGATGGAGATCTCGTCGGGGGTGTTCATCGGTAACCCGTCCCGAAGGGTCAGAGAGGCGCTCTGGGCCGAGGTTCAGGAGTATGCCAACAACGGCCGAGCGCTGCTCGTGTACGGGAACGACTCGGAACAAGGATTTGCCTTCGAGACATTCGAGCATGATTGGGAGCCCAGGGACCACGAGGGGCTGGTGCTGATGCATCGACCCAAGAACCCAACCCGCAGAAGCGTGGCCACACCCAAGACCGGTTGGAGTAACGCTGCCAAGCGGAGAAGGTTCGGGAAGCGATGAACCATGTGGCGCCTGCGGGGCTTTTGTCTTCAATGTCCAACTTTCAAGAAGTTGGAAAAATGACCCCTTGCCGCTGGTAAGTTCCCTGGTCAAAAAGT # Right flank : CCTGCTTGACTGGTGGGGTCTAAGAAGCTGGGGGATGCCGTGGGCGGTCGGGGTTGGTGCGCAGTGGGGCTCGCGGTTCTGCTCGTGGGATGCGGGGCGCAGGCAGGGGAGTCGGAGGCTCTGCCGGAGGGCGGGTTCGACTACCAGTTGGGTGATGCCTACCCGCCGCCCGAAGGGGCCACCATCGTGGTGCGCGACTCCACGGCCGAACCGGAGCCGGGCATCTACTCGGTCTGTTACGTCAACGGCTTCCAGACCCAGCCCGGGGAACTGGACTCATGGCTGGACGCGGGGCTGGTGTTGCTGGACGGGGACGGAGAACCGGTCGCCGACCCGGGGTGGCCGGACGAGATGCTCCTGGACACCTCCACGGACGACAAGCGGGAGCGGATCGCGGGAATCCTGGCGGACACCGTCGACGGGTGCGCGGAGGCGGGGTTCGACGCTGTGGAGTTCGACAACCTGGACTCCTACCTGCGTTCCCGGGGTGCCTTGAGCGT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 208923-208649 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000005.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 208922 30 96.7 31 .............................T CGTGCCCCAGGAGGGCGCCGGTGGTGAGCCG 208861 30 100.0 31 .............................. TAATCGACTCGGTGGGCGAGTGGTCGGCGCG 208800 30 93.3 31 ............T................T CGGACCCGACCGTCATCAGGTCGCGGAACGC 208739 30 93.3 31 .........................G...C ACGGCGAGCCCCCGGCCGCCCTCAGCGATGT 208678 30 76.7 0 ............TT.A.........GTGG. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 92.0 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGAGACTGCCCGTCCCGGCTCGGGGCGGTCTTGGTCGATCGCCGGAACCCCTGGGCGATCAGGGCCGGAGGGTCGGTGACGTCCTGCCTGAGGACGAGCGGAGGCCTCCAACCCACGAGCGCTTGAACCCACGCGGTGCGCGAAACACCATCCACTCACACTGCCCTGAGTGGAACGAATCACCCCAAGGGCTACGCGGTGAGCGGGGCCTGACCACGGCTCGGGTTATGGGCGGGTCTGCCGTAGAGGATTCCCGCCGCCCCACCTCACGTCGTAGAACGGTCATCGGCGCTCAGCTCCAGCCGGTTCTGCGGTGCAGGGCACACGTTGTCCCAGTCGACGCTTGTGAAGTCGCTGATTGCGGAACGGAGTAGCCGTAAGGATCCGGGGGCGGTAGAAAGAGCAAAGGAAGATCGCCACGACGATGGGTGAAATGTCTGTTTCTCAACAACTTGCAGATTTGGCGTCTTTCCGCTGACAAACGTGCAGGTCAATGAGA # Right flank : GCCCGACGTCTGCCGGGCCCCTTTCTCTTGGTGGCTTAGGTCAGGATGCCGATGTTGTGGGTGAGGGTCTGCCCCAGGATTTCCAGGGTGGTCAGGCCCAGGAGGAGCGCGGAGCTTAACGCGGTGGCGGGCCATCCCCACCAGGGGCGGGGCGCGCGGTGGCGACCTCGGGGGAGGGTCTCATTCGGTTCAGTCCGGGTCGTGGCGGCCTCCTGTGCCTTCCGTTCGCGCTGTTGGCGGGCGACGTGCACCCAGTGCGGGAGGGCTCCGTGCTCGAGCATGTAGGCCACTCGCGGATTGCCCTGCATCTGGCGCAGGAGACGTTCCTGACGGGCCTGGTGTGACTCGGACCAGGGCAGCCCCGTGTGGGCCCGTTCGATCTGGGGCGACTTCGCGCGAGGAGCCATTGCCGTAACCGGAACGACTGGGGACGGCACGGTCCGCTGCGGGTGTGCTGGGCGGGGGAAGCGGTGCCCTCGGGGTGCGGCCAGGACCGACCG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212551-211973 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000005.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212550 29 100.0 32 ............................. ACCGCGCGGATCGAGTGCCCCGTGTGCGACTT 212489 29 100.0 32 ............................. TGGGTGGCGACCGGGTCGAGAGCGCGGGGCCG 212428 29 100.0 32 ............................. GTGTTGTCCCGCGACCTCGACCGCCACGGACC 212367 29 100.0 32 ............................. AGGCCGGTCCGGCGTTGGCGTCCTGGACGCAG 212306 29 96.6 32 ..................T.......... GTGGTCGGGCTGTTCGTGGCCACCGGGGTCCT 212245 29 100.0 32 ............................. TCCTGGCCGTCCATCGGACCGCCGAACAACGT 212184 29 100.0 32 ............................. AGGCGGGGGTTCTCCGCCGCGTCGTGGCGGAT 212123 29 96.6 32 .........................A... CACTTCGCCTTAAGCCGTGCACTCAGGTCGTT 212062 29 96.6 32 .........................A... AAGGGGATGAGGCCGACGCCCACCACTTCCTA 212001 29 93.1 0 .........................A..A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GGATGCGCCACTTCCCAGGCGCGGTCCGCGCCAGTGTGGCGGTCGGGGGTACCGGTGTCTTCACCATGATGCTGCTTCTGGGTACGTCGTACCGGGTGCAGCCGCCGCCGGGCGAGGAGGGCCGGGTGCGTTGTTCCCCAGTTGTGTGGGTGGGGCCCGCTCTGTGGGACGACCGACGCGACTGGGGCGAGGACATCGAGCAGATGATTCGGCAGGAGTGGGTGGACTCGTCCTGTTCGGAGCGGCAGAAGCGCCGCGCCGCCCTGTCGTTGGCGCTGGCCCTGCCTTCGAGCCTGTGCTTCGCCTACGCCCTCGTGAAACTCCCCAGGGCAAAGGACGGGGATTCCTAGCGGGCCTACGATGGGGAACGAGTGGCTGTACGCGTTCTACGGGCAGCGGAAAGTGCAGAGATGACCGTGGCGAGTATGGGTGAATTGTCTGTTTCTCAACAACTTGCAGATTTGGCGTCTTTCCGCTGACAAACGTGCAGGTCAGTGAGA # Right flank : CTACCGCAAAATGGCGAACGCCGGAATGCGGGGGACTGAGCTGTACGGATCCTCCGATTCCGTCAGGCGGATCGTGGCAGGCTGGAAGATGACCACCGTGATTCCACGACTTCTCCACTGACCGCGCACAGCAAAGAAGGAACCACGACGTGAGCGTGATCGAATACGAGGCCAAGGTCCTGGATATCGACTCCGCAAAGGTGGCCCGGCTCATTCTCGACAAGGGTGGTGCTGACCTGGGTGAGGTGCTTCAGCGGCGCTACGTGTACGACATCGAGCCGGGGGACACGTCGCGGTGGGTGCGTCTGCGCGATACCGGGAACCAGGTCACGCTCACAGTGAAGGAGATCGACTCGGACGCCATCGGCGGTACTCGGGAGACCGAGACGGAGGTCGGTGACTTCGAGACCGCCAACGCGTTGTTGGGCAAGCTCGGTTACACACCCAAGGCCTACCAGGAGAACCGACGGCACAGCTTCACGCTGGATGGCGCCCAGTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 242333-241507 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGTF01000006.1 Nocardiopsis sp. L17-MgMaSL7 Ga0060225_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 242332 30 96.7 32 .............................C CGCCGCCGCACCGGCCCCGCCGAGGACCCGCA 242270 30 96.7 31 .............................C GTACTGAGGACATCCCCGCGCCGGAGCCCCT 242209 30 100.0 31 .............................. CAACCCCCGCCCCCGACTCCGCTCCCGCTGG 242148 30 100.0 31 .............................. TCGTGCAGCCAGTCAGGCGCATCCCCAGCGC 242087 30 96.7 31 .............................T GGCATTCCGCAACCCTCAAGAGTCAACATGC 242026 30 96.7 31 .............................A AGGGCATCATGCCCCTGTGGAACAAGGTCGC 241965 30 100.0 31 .............................. AAGCCGCCCAACTCCGCGCCAACCCCAGCCG 241904 30 100.0 31 .............................. TGTTGCCGGTGACGGTGTTGTCACCGCCGTA 241843 30 96.7 31 .............................A CCGAACCGTCCAGCATCTTGCGGATGAGTTC 241782 30 93.3 32 ........T....................A CGGTGCTCGGGTACCAGAGCATCCTGACGAAC T [241779] 241719 30 93.3 31 ....G........................A GCTCCCCCTGCGGAACCGCCTCGTTCTCCAC 241658 30 83.3 31 ..............G.T....G...C...C CAGACGGTTCCCCTGCGGATCGCCTGCCCGC 241597 30 90.0 31 ......T......C...............C CTCGCGCATCCGCCAAGACACCGCGAGGGCC 241536 30 90.0 0 ........T...........A....G.... | ========== ====== ====== ====== ============================== ================================ ================== 14 30 95.2 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCGCACCTACACCAACGACGCGTCCGAGGTGACCGCCGAGGGCGGCACCCTGGCCGAGGTCCTCGACCACCTGGAAGCGAACCACCCGGGCATCCTCGCCCGCGTGCTCGACGACGGCGGCAAGGTCCGCCGCTTCGTCAACGTCTACGTCGGCGACGAGGACGTCCGCTTCGAGAAGGGCCTCCAGACCGAGGTCCGGGACGGCCAGCAGATCTCGATCATCCCCGCCGTCGCCGGGGGCTGCTGACCCGCACGAGCAGTGGGCGGACCACGGGGCGGGCACCGGTCGGTGCCCGCCCCGCCGCGTGTCCGGACCCTCGTAACCTGGGAGGGAGATTCTCCAGGGGACGAGGGTGGCGATGTCGGCGACGCGGTTGTTGGTTCGGAGAGAGAAGAGATGAACCATGTGGGGCCTTTGGGGCTTCCTGTTTTCGGTGTCCAACTTCTGAGAAGTTGGAAAAACAACCCCTTGCCGCTGGTAAGTTTCCTGTTCACATAGT # Right flank : CTTGCGCGCCAACGTTCAACCAGATGGTGGGGCGACCCCTGGTCACCGGGCTGGCAGAACCTGGCCACCCGGTTCCACCAGGGGTTCGTCCGTTGTTCGCCGAGCGCTCAAACCGCCCTGTGGAGGGAAGTCCGCGCTGTTCAGGGCTGTTTCCGAAGCTGGGGAAATCGTGACCACATCGTTTGCACTCTCCATGGTCGAGTGCTAAAAAAGGGAGTGGTTAGCACTCACCTTTACCGAGTGCTAACCGGATCGAGGCTGCGAGATCGCGGTCCTCCGGCAGCAGGGTTGCCGGTGCGAACGCGGTCGTCCGTCGCGGGCGCACGCCTCGTCCCATCGCGTATCAGCCCGGTCACGGGAGGACAAGAACTCAATGGCAGCCAAACTGATCGCGTTCGACGAGGAGGCCCGTCGCGGCCTCGAGCGCGGCATGAACCAGCTCGCTGACGCCGTGAAGGTCACGCTCGGCCCGAAGGGTCGCAACGTCGTCCTGGAGAAGA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //