Array 1 201221-202774 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNZB01000003.1 Escherichia coli strain MOD1-EC5999 MOD1-EC5999_3_length_281594_cov_59.5214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201221 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 201282 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201343 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201404 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201465 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201526 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 201587 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 201648 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 201709 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 201770 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 201831 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 201892 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 201953 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 202014 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 202075 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 202136 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202197 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202258 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202319 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202380 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202441 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 202502 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 202563 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 202624 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 202685 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 202746 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218291-219113 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNZB01000003.1 Escherichia coli strain MOD1-EC5999 MOD1-EC5999_3_length_281594_cov_59.5214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218291 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 218352 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 218413 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 218474 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 218535 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 218596 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 218657 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 218718 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTTAA 218779 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 218841 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 218902 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 218963 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 219024 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 219085 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //