Array 1 111858-111428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTN010000011.1 Paenibacillus sp. CAU 1523 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 111857 32 100.0 34 ................................ TTAAACCCTTAAGTACTTAATTAACTACTACTAA 111791 32 100.0 33 ................................ TATACAAGAAGCGGAATATATACAGTATGCTTG 111726 32 100.0 36 ................................ AGGAAGGGCTACTGGAACAGGCACGAGGGAGAATCG 111658 32 100.0 35 ................................ TCGCATCTTTGTTGTATCAATATCTCGCATCCTAA 111591 32 100.0 33 ................................ TGGATTTTTTGATGGACATTCCAACTGATTTTT 111526 32 100.0 34 ................................ ATTCACCGCCTACTTCCTCCGCCTGATATTTTTA 111460 32 87.5 0 ....................AA......C..G | C [111430] ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.2 34 GTCACTCTCTACACGAGAGTGTGGATTGAAAC # Left flank : ACTGTCTCCGCTCGCAGATCAGGAATGGAGTATGAACGTCGCTCTCTACGCGAGAGCGTGGATTGAAACCAGAATGCCCAAGATTCACTGTATGGTGGTCGAAGTCGCTCTCTACGCGAGAGCGTGGATTGAAACCTCTATGATGGTCAACAATGAACCGAAAGGGTTTGTCGCTCTCTACGCGAGAGCATGGATTGAAACTCACGGTCACGATCAATCTTCTGATAGCTGTGGTGTCGCTCTCCATTACTAGCTGATTTAACCGTAATAAAACTTAACGTGAACTATTAATGTTTTAGGGGGAAATCTTTACTTTTTCAATTATTTGATTTGGTGCGAACCTTAAGTGCACATAAAATCCCTAGGGTATTCGCACCTGCGCAGTGGCGCGAGTTTTGAACATTTTTCTTGTTTTTGCACGTTGGAAAATGGGGTGAAAAACGAGATTCGCACTTTTGGGCCTCTGAGCCCTTGCGTAGTAAGGGCTCAAAAAGCTCGCA # Right flank : TGATGGACTAACACAACTGATAAGGTATAATAAAGATAATCCGTGTCTGGCACGTACCAGCGCGGATTATCTTTTTTCTGTACATATGGTATAGGATAGGGTATATTTCAACATGCTTGGATTAAGAGCAATTTAGCAGGGACAAACGGTAATGCATCTACACGATCAACCTATAAGTCTGTGCAAAATAGGTAACGGAGTGATCATTTGAGTAAAAGCAAAGGTAAAGGAACGGGGAGAGGAACAGGCAAAAAAGGCTGGAACCGCTGGCAGGCTAGTGAGAAGCGGAGACAGAATGCGCCAAAACCTTACAAAAGTAAAGGCACTAAAAATCCCAATGGAACTAATGCTAGTGACACTAAAGGTGACTGATCGAAATAGAAAGCATGTTGCTAATTCTTTATAGAAGAGAACAAGCATCGTTTGCTGAGTAGATAAAAGGAGATGGAGTAAATGGAATTGGACAACCAAGAATTGCAACAAGAAGCAGCTTCAAAATA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTACACGAGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCACTCGCTACGCGCGAGTGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 112586-112157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTN010000011.1 Paenibacillus sp. CAU 1523 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 112585 32 100.0 35 ................................ ACTTCACTTGTGTCAACAACTATGTCTACCCCAAA 112518 32 100.0 34 ................................ AAATTAGTCCCTCCAAATTTTATGTACTATTAGT 112452 32 100.0 33 ................................ TGGTAGTCGCCGGACTCGCAAATTTCAATGCCG 112387 32 100.0 35 ................................ TGTCTCCGCTCGCAGATCAGGAATGGAGTATGAAC 112320 32 100.0 34 ................................ CAGAATGCCCAAGATTCACTGTATGGTGGTCGAA 112254 32 100.0 34 ................................ CTCTATGATGGTCAACAATGAACCGAAAGGGTTT 112188 32 96.9 0 ....................A........... | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.6 34 GTCGCTCTCTACGCGAGAGCGTGGATTGAAAC # Left flank : TTGTACACGAACTTGTTGTACAGCCAAGCGTTGTTGATCGAAGGCTTGCCGCTGCAAGATCCAGTGGAGTTTACGAACAACATTTGTAAAGTGATGGTGTAGATTCAAGGTAGAGATTCTCTTATAGTAGATGTTCTCTATATTTGAAATAAAAGAGCTGTTAATAAGGTGAATGGTGAGTAGTAAGTAATCATGGAGTGATTATTGTGTATCAGTCTACTTTCTTAGAATGATTCATGCAGCAAGGCACCCATTCGTTTACTCTGACTCGCAAATGGATAACCCGTTTCCGGTGCACACCGGAGCGGGTTATTGTGCTAATTATGGGCATATTGTGCGAACCTGTAGCGCACATAAAATCCCTGGGATGTTCGCGATTGCGCTATGGCGCGGGTTGCGAGCCTTTTTATCCTATTTTGGGCCAGAAAATGTTCTGAAAAAGAGAGGTTCGCACTTTTAGTGCCCTGATCCCTTGTGTTATGCTAGCTGAAAAGACACCT # Right flank : TCACGGTCACGATCAATCTTCTGATAGCTGTGGTGTCGCTCTCCATTACTAGCTGATTTAACCGTAATAAAACTTAACGTGAACTATTAATGTTTTAGGGGGAAATCTTTACTTTTTCAATTATTTGATTTGGTGCGAACCTTAAGTGCACATAAAATCCCTAGGGTATTCGCACCTGCGCAGTGGCGCGAGTTTTGAACATTTTTCTTGTTTTTGCACGTTGGAAAATGGGGTGAAAAACGAGATTCGCACTTTTGGGCCTCTGAGCCCTTGCGTAGTAAGGGCTCAAAAAGCTCGCAGTCACTCTCTACACGAGAGTGTGGATTGAAACTTAAACCCTTAAGTACTTAATTAACTACTACTAAGTCACTCTCTACACGAGAGTGTGGATTGAAACTATACAAGAAGCGGAATATATACAGTATGCTTGGTCACTCTCTACACGAGAGTGTGGATTGAAACAGGAAGGGCTACTGGAACAGGCACGAGGGAGAATCGGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTACGCGAGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 57631-57333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTN010000012.1 Paenibacillus sp. CAU 1523 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 57630 32 100.0 35 ................................ TATTAATCTAGCACAAATCAGACGGCACGAAGCGG 57563 32 100.0 35 ................................ ATTATTCGGAGTTGGTGGTGCGATGACACAACAAT 57496 32 100.0 34 ................................ ATCCAATTAGAAAAGGATTGGAATAGCCCAGATA 57430 32 100.0 34 ................................ ATATGTACGTTTAGATAAACGCCCCATGGATGAT 57364 32 96.9 0 ..............T................. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 99.4 35 GTCGCATCCTATATGGATGCGTGGATTGAAAC # Left flank : AGATATCGGTCATATTGTAGAGATTATGAACCGACTTGTAGATGCGGGTAATACGGTGATCGTCATCGAGCATAACATTGATGTAATCAGTCAAGCCGATTGGATTATCGATATGGGGCCGGACGGAGGCAGCAATGGCGGACAAGTGGTGTTTGAGGGTCAACCGATGCAAATCATCCATGCGGAGCAGTCGATTACGGGAAAATATTTAACTTGACCGAAGCTATTATTTAGGGTGCCTGTTAACTTTAAATGATTAGGTAGAAGTAATGAACCGAATGGAGTATGATGGAAGTGCAATTCATTGAAAAACACTTTCTATCAATTTGGTGGTGCGAATGTGAAGTGCACATGAAAATTCCGGGGCATTCGCACCATTTTATTTACAATGATATACATTTTCGTGGTGCTGTTCTGGTTTTTATAGTAATATATGTTGATTTATGGTGTATTACTGCTCAGGAATAGGAACGTTCGCTCTCTTTTTGTATAAATTCGCT # Right flank : TTACAAACCGCTTTAATATCTAGATAACCTTGCTTATCGTCACATCCTACAAGAATAGTAGAGAAAGAACCACCGCAGGATGAAAATCCAAAGCGCTGGTTCTTTTTTTTGTTGTTATACAAGTGTGGGAAACGGGGAGCATCCACAAATTCACAATTATTCGGGACAAATCGTTCACAATAGTATAGAAAAAGTGTAAAGATAAATAGAGTAGATATTAGCTTTCCTTTTTCATGGAATGAGAGCTGCTTTAGTATAACGAATTGAGCGAGATAAAATAATTGACATTAGTTTAGTTAATAAACTAAACTAAAAACGTAATAACTAGTTAGTAACCACTAGTATCGATAAGGAGGAGTGAATAATGAACAAATGGAAACAAATCGCACGTATTGGATCTCTTATGAGCCTGATCTTGGTAATGGTGGGCTGCTCCGGGGTTTCGCAACAAACGACTGATAGAATAGGGGGGAATGACGGTATTAACCAACTGCAACAGT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATATGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 67378-67008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTN010000012.1 Paenibacillus sp. CAU 1523 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 67377 32 100.0 37 ................................ GTGTAGTGGCTCATAGCGTGACTGCCACGGCGTTTGT 67308 32 100.0 34 ................................ TTATAGGGAATAGTCCGATCTACACTCGACATAG 67242 32 100.0 34 ................................ AATTCCGATCTCCTCCATGATTGCGTCTATCTTC 67176 32 100.0 36 ................................ CATGCACGATGTCGGACAACAACGGTACCATACTTT 67108 32 100.0 37 ................................ TCTTTAGTTGGGAGTTTGACATGTAATTAAGCCAAAG 67039 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 100.0 36 GTCGCATCCTACATGGATGCGTGGATTGAAAC # Left flank : TTCATATTGGTCGTAATACGACTTTTGGATGCGGTCAGGTTGACGTTGTATTTGCGTAAATATGATTCTCATTCATGCGGCCATACGACAAAAATAGGAAGTGGGAAGATTTACTCGTTATCTTACATTTAAAGTGTCTGTCTGTGAATTTATTCGCATTTACATTTTACACTTCTTATTATGTGAAAATGACTATGTTCTTTAGATACATGGTTATAGACTTTAAAGGTTAATAGCTAATGCATGTTCAAGTTACCAGATAGCATTTAAAAGTGGAATAGAGTATGATGGAAGCACGACTTTTACTGATTGATCGGACTATCATTGCTTGGTGCGAATGTGAAGTGCACATAAAATCCTTGGGACATTCGCACCAAATATTTTCTAGTTATTTACTTTTTCGTTGCATGGACGCCTATTGATTTGGGGATAAGTGCACTATTTTATTGACTGTTCCTAGCAAAGAAGAACTAATGTTCTTTTATTGCTGTAATTTCGCT # Right flank : TGTGAAGCTATAACAACAACCATTTTTTCTGAGCGTGAGTCGCATCCTAGAAGAATTATTATGGATGTATACAAAACCAATGATGTATCCGATAAATCCGTCCACGAATCCGTGGACATAGGGGAAGTAAAAATGAAAATATACGGTGCAATCATAGATAGTGAGACCCGGTGCACACACTATCATACAGTGAAAGATATTATCGCTATCAAATTTTATTGTTGTAATCGCTATTACCCATGTTACAAATGCCACGAAGAGAATGAAGACCACGACATTCAAGCTTGGCCGCAGGAACAATTTGAGGAAAAAGCTGTTTTGTGTGGAAGTTGTCGTAGTCAAATGACGATCCTGCAGTATATGAATACGAACGATTGTCCTTATTGTCAAGCTTCATTCAATGAGCGATGCGCACTGCACTATTCGATTTATTTTGAATCGAACGAAAGCGGCAGAACCACCCACGGATGAAAAATCCAATGCGGTGGTTCTTTTTTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACATGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 81114-80534 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTN010000012.1 Paenibacillus sp. CAU 1523 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 81113 32 100.0 35 ................................ ACAACTAGAAGAGGCGCGGCTAAATGCATCGCCAC 81046 32 100.0 36 ................................ CAGATTCGATTGCTCATAGACCTTGAAACGAGCGGT 80978 32 100.0 38 ................................ TATGGTCGGCCCAGTCGTGACAGAGCAACCAAGCACAG 80908 32 100.0 39 ................................ CCTAAGTCCATTGGACGCTGTATTTGAGCATTGACTGGA 80837 32 100.0 35 ................................ AAATAAGATTCTAAACGGAATTGAGTAGATACAGA 80770 32 100.0 34 ................................ ATCGATGTAGGTATTCATTTGCTTTAATGTAATC 80704 32 100.0 37 ................................ ACACCCTCCGTATGCGGGTAGGAAGCTCTTAAATTGG 80635 32 96.9 38 ....G........................... AAGCATCTGTTGCTCATCAATTTTGTTTTGCTCTTCAA 80565 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ======================================= ================== 9 32 99.3 37 GTCGCATCCTACATGGATGCGTGGATTGAAAC # Left flank : TGTGGCTTCAATTACTTGGATTTTGAACATGCCAAGGCGGAAATCGGTTATGACATTGCTAAAACATCATGGGGTAGAGGATACGCCACGGAAGCGATTCAATCTTTGCTAAATTACGGTTTCTCAACGCTAGAACTTAATCGAATAGAAGCCAAAGTAGAACCGGAGAATGTTAACTCGGCAAAGGTCTTGCAGAAGTTAAACTTTACATTTGAGGGAACATTAAGACAGTATGAAAAAATAAATGGTATATTTAATGACCTTACTATGTATTCGAAGTTACGATCTGATGCATAGTGTTGATAGTATAAGCGATCTCTTTATTTAGTGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGACATTCGCACCAATTATTTTCTATTTATTTACTTTAAAATGTCGTGCGTTCTTTTTGTTTTGGTGATAAATGTACTTTTTATTTGACTGTTTCCAGTGAAAGGGGAACGATCGTTCTTCTTTCGCTGGAAATTCGCT # Right flank : ACCCTTGACACGCAGGGCGAGAACGTTGACGTATATGGTCACATCCTAAACAGATAATAGAACAAGAATCATCGCAGGATGAAAAAATCCAGATAATATTTATAGCGCGTACATAAATAACAAAAAGACAAAACATTCAGGTCCAGAAGTGATTTGGTACGGACCCGTTAGGAATTAGCACCATACGAACGAATCGTATATGCAAAAGGTTGGCACTTTAATAAGGAGAGTTTCTAAAGCGTCCAACAACACGGTTAGGAGAATATACATTTGCCGAGGGATCCTATTAACGCTGATTTGGATCAAAAGTTTAAAAAAGCATTAAGAGAATAGGCAACTAGAAAGGAACGGATACGTCGTAAAGAAGCCCTGCCTACTTAATGGTGCAGGGCTTCTTTGTATTCGATATATTTCATTCAGCTATTAAAATTATTTGTAACGTGGAGATGAACTAGCATTTTTTTGATAAAGTGTGCAATTGTTCATCTTTTTTGTGAAAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACATGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //