Array 1 1623800-1623378 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014724.1 Sulfurospirillum cavolei strain UCH003 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1623799 30 100.0 34 .............................. TGACGCACTCGCTGAGTTGTAGAGTGTCTTATCA 1623735 30 100.0 36 .............................. AACCAACACGCCAAAGGCAGTAAAAAAGCCGCACGG 1623669 30 100.0 37 .............................. AAAGCTGAAATTATATCGATCGCGAATAAAGACTTTT 1623602 30 100.0 34 .............................. TGGGACATCTTGGCAACACTAAGACGTCGCCAAC 1623538 30 100.0 37 .............................. AAGTGTAGCTATTATTTAATTAATACAATCACTTACA 1623471 30 100.0 34 .............................. TATAATATGCGCCATACGTTTGCTACTAATATGC 1623407 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 CTCGAACCGACACAAGATTTGTATTTAAAC # Left flank : GTTAAATATAATACTTTGTTCGTTTATCACCTGAAAATATGTTCCTTTGTCGTGTTCCTTTGTCGTGTTCCTTTATCACAGTTTGGAAACACCCAAAGGAACAAAATAGCCTTTTCGCGGTATTCGTTTGTCATGTTCGTTTCTGTTCGTTTGTCGTGTTCGTTTGTTGCAGTTTAGCAACACTTAAACAACCAAAGCAGATCATCAAAAGACCACCAACATTTTCGCATAAATTTTCGCACCACAAATCAAGCACAAACAGCCTATACATCGAAGTATAAACAACTATCCATGTTAAAGATAAACACCAAAGTTTTCACGAATCAAGTCAATAATTTCGCAAAAGAACACGAGAGTGAAAAAACAGCAGAATAATTTAAAGATGAAACACCAGTAACACACGCCACAAAGTGCCTATTTTAGGGAAGTGCGCCAAAATTCCTACACTATCATTTCATACAGCCCCTCACAAAAACAAGGAATAGAAAACCCATTATATT # Right flank : AACTATATCGCTAACGTCTTCGTCTATTTGTATAACTCAAACCGATATGTGTGTTTGATGTACGCTTTTTATTTCTCAAAAGCGGTGTTTAAAATCGAAAACGGCAGTTGTTTTTTGGGGAAGTATTCATAGCTTAAACTTGCGTTACCTTCAGCGAAGAGAAGCATATCTTCGATGAGGGTTTGCAGGGCTTGGATCTCTTCGAGTTGCACTTCTAAGATACGACGGTACTCCTCGTCGGAACGTTCTTTACGCAGTGCAATCTCGATCTCGCCTCGCATAATGGTCAGAGGCGTTCTCAGCTCATGGGAAGCTTGGGTATTAAACGCTTTAATCGCGGTAAATGAATGCTCCAAGCGCTCTAGCATCGCGTTAAACGCGGTGGCGAGTCGGCTGATCTCATCGTCATTGTTGTGTGTTTCGATGCGCCCTGAAAGCTCTTTCGCGTTGATCGTTTGCATGTTGTGAAGCATCGCTTGAAGCGGTTTAAAATAGCGACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGAACCGACACAAGATTTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1659865-1660608 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014724.1 Sulfurospirillum cavolei strain UCH003 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1659865 30 100.0 37 .............................. TCGATTTTTTGCGTGACCTACAATGTCAGCCACAATT 1659932 30 100.0 34 .............................. AAAACAATTATAGAAGAGGCAATAAGAAAACCGA 1659996 30 100.0 36 .............................. CAAGGACGGATACGCCCAACCTAGATAAAAAAGGTA 1660062 30 100.0 34 .............................. CCCATTAAGTTCTATTTCTTCTCTTACTTCATGG 1660126 30 100.0 34 .............................. ATTTTTCAGTCTCTTTTCTTTTGCCTTCTAAATA 1660190 30 100.0 35 .............................. TTTATTTTGAATATCCATACTGTCTTTATGATTAA 1660255 30 100.0 34 .............................. TAAAAGAACTTTATCAAGTAGATTGGTTTGAAAA 1660319 30 100.0 35 .............................. GTTATAGCTTTCGTCCCAAGAATAAGTAGTTGAAG 1660384 30 100.0 34 .............................. CTTCGCAAGAGATTTTAAAGTGGGATAAAGCAGG 1660448 30 100.0 37 .............................. GATATGTTAAAAACTGTTTAGACGCAACCGTCAAATC 1660515 30 100.0 34 .............................. GCGCTTCTCCAACAACATAATCAATAGCACTAAC 1660579 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 35 GTTTAAATACAAATCTTGTGTCGGTTCGAG # Left flank : AGAGACTGCAAGGTGTTTGTGTCGAAAATATGGACTTTAAAAAGCTTATTACGACCTATGATCATCCCGACACGCTCTTCTACCTTGATCCACCTTATGTAGGTACGGAAAGCCACTATAAAACACCTTCCGGATTCAATATCGATCAGCATATTGCATTGGCAGAGATGCTCAGGGGGATCAAGGGTCGGTTTGTGCTTTCATACAACGATTGCGAGGTCGTCAGAGACCTATATAAGGGCTTCGAGATCATAGAGGTCTCTACGTTATATAGTTTACGAGGAGGAAGTCAAAAACAGGCTAAAGAGGTCATTATCAAAGGGTAGGCGCTTCGGCGCTTACTCATTTAGTAGTTTAAAATTTGAATTGAATATGATAGCAAAGTGGGATAAAATCGGTTAAAAGAGCGTGTAACTATCATTTTAAATTCAAATTACTAACATTTTAAGCGCGGTTGTACACGAGGTCGTAAACGCCGTCGAATGCTAAAACGGGGGATA # Right flank : GGGCTAGATTATGGCACTTTCTTAAAAGAGTATTCCCATAAAATAGCCATTTTGGTCATTTTTTCCAATGAAAATTAACAGTAAAATGTTAAAGATCAAAAAGGCGACTTAACGCCCTATTTTAGCAATTTCCCGCCTAAAAAGAACTAAACCGTGGTTGGAAAAATTAGATGAAAATTCCCTCGCTCTCCTTTTTTGGATTTCCAAGATTTTCTTCGCTAAAACTTCCTGAGCTGAGCATCTTGATGATCGTCACGAAGTCGATCTCTTGGTCGATCACTTTTTTAAGTTCGCTTTGAAGTTTTATTTGATTGGCGGGTGTGATATTGCCTCTAAAGATAGACTTTTGGTGATGTTTGAGGTATTTTTTACAAATTTTGAAAACTTTGGAGACACGGTATTTGCCAACATCGCTGAATTCATCGGCTATATCATAAAACAAAAAGACATAATTGTAGTTGGTTGTGTCCTTTTTCACATCTTTTCCTTGAGCAAAAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACAAATCTTGTGTCGGTTCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 2125601-2126560 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014724.1 Sulfurospirillum cavolei strain UCH003 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2125601 31 100.0 36 ............................... AATGTATGCAGGGATTCAAGATCATGGCGGCGTTGC 2125668 31 100.0 36 ............................... CTAACGGGGATGTATTTCAACTTACTACATCGACGA 2125735 31 100.0 36 ............................... ACGTGTTCATTGCAGAGTGTGAACAAGAGTACAACA 2125802 31 100.0 36 ............................... AGTAAAGAGTTATTGAGTGAAGTATTTGCAGTAAAT 2125869 31 100.0 36 ............................... ATGGAAGAGGTTAGTTCCCCTTTTGGATATAAATTT 2125936 31 100.0 36 ............................... TTAAATCAAAAAGCGATAAATCAATCAAAGAAGAGA 2126003 31 100.0 36 ............................... GCGTAAACGGTTTTTTTTGTAACTCCGCCGATGACT 2126070 31 96.8 34 ...T........................... CGCATTGAAACGAAAACGGTATCGGCTTTAACGC 2126135 31 100.0 34 ............................... ACAACAACAAGTGCAAAATGGAGAAAGATTCTAA 2126200 31 100.0 34 ............................... AAATATTCCATAAATGCCCGTGCTTTCGATCTTT 2126265 31 100.0 35 ............................... TTTGTTTATCAATTCAGCTAATTATGAAGCGTTAG 2126331 31 100.0 37 ............................... AGTACCACATGACAAAAGATTTAAACCTATCTATCTC 2126399 31 100.0 34 ............................... CACATGAAAAACTACGAACTTTTACAATACTATC 2126464 31 100.0 35 ............................... AATTTAAAGCATAATGAAAACGTGAAAATCTATCA 2126530 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 15 31 99.8 35 CTCAAACCGACACAAATTGTTGTATTTAAAG # Left flank : CGGCTTTGACCCAGACCGTGCGCGTGAATACCACGACAAAACCTTACCCGTCGAGAGTGCCAAAGTCGCTCACTTCTGCTCCATGTGCGGCCCAAAATTTTGCTCGATGAAAATATCTCAAGATGTGAGAGATTACGCCGCCAAAATCGGTGCAGAAGATGTCAATATTGCGCTAGAAAAAGGGTTGGAAGAGCAAGCAGAACACTTTAAAGAGAGTGGCGGACAGATTTACATGTAAAGAGTTCGTCCTTGTTTTAACAAGGACGAAAACTCCTTAGGCCCTTACTAAAATAAAATACATTGAATGCTTTCTCCCCCGATATTTCTTAATCTGATTTTTTCCAACCGCACTTGACGCTTTTTTAGATCTAAATCGCTATAATAGGGCACGTCATCGCCTTTTTGATCTTTAACAATACATTGTTAATTTTAATTGGAAAAAATGACATAAAAGGCAATTTTATGGAATTCTAGTTTTTAAGAAGCTCTATAATTTAGCA # Right flank : GATCATTCTTACCTATTTTAGATAGAGCAAATGCAAAAAGGGGTCAGGGCTAAACTTTTAACTTTTGACCATTAATCTTCTATTTAATACGTTAATTCTAGCTAAATTTTGCATAGAAAGCTTTACATATAAGCTTTTCACTTCCCTTCACGATGCGGGTTGTTTTCGCCTCTAGGTATGAGTTCATCCATATTTTTCCCACCGATAAAATACGCCTTTCCAAACCCAAACGTTGCTTCGCCGTACGTCACTTTGAATTCGTAGAGATTAAAGTCGGTCATCTTTTTAAGCGTATTTACCATTTTGGCATCAAACTTTTTGGCGAACAAATCCAACACTTCTTCAAAACGCTCGCTTCCTCGTGTTATTTTTACACTATCGCACTGCAATGAGACGCGTTTTCTCGCAAAGAGATTTTCCGTTTTACTTTCGTCTTCTATGAAAAAGAGCGAAGCTTTGGGGTTTCTTTGAAGATTTTTAGCATGCGTGGCAATGTCGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAACCGACACAAATTGTTGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //