Array 1 238227-239908 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRPJ01000001.1 Staphylococcus pragensis strain CCM 8529 NODE_1_length_1146875_cov_243.441061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 238227 36 100.0 30 .................................... CATTTCTGGGCTATTCCACGCTTTTTCTAC 238293 36 100.0 30 .................................... AACGTGGAGCATACGGAAGCACAGGAGAGT 238359 36 100.0 29 .................................... AAAAAATATAAAGATTTATTATTAGAAAT 238424 36 100.0 30 .................................... TGACTCACTTGACATACCTTCAGCACCAAT 238490 36 100.0 30 .................................... TTTTTTATCGTATTTATCTGGTTGTGGGAT 238556 36 100.0 30 .................................... GACTATCTTCCATAGTAGAAGCGTTTGTGT 238622 36 100.0 30 .................................... GACGTGACGCAGTAGAAACATATCGTTACG 238688 36 100.0 30 .................................... GAACTAAATTAGTTCTCTTAGGATATAAGA 238754 36 100.0 30 .................................... ATACACCTGATTTAAGTGATGAAAACTTTA 238820 36 100.0 30 .................................... TCTGAGCTTACTTTAGATGTATGTTCTACT 238886 36 100.0 30 .................................... TCAAACGTCGTCGAATATATGCACCTATTA 238952 36 100.0 30 .................................... CCAAAGCTTGTACATCAATTTGATTTGGTT 239018 36 100.0 30 .................................... GTCGACAGACTATAAACGGAGGTATATCTC 239084 36 100.0 30 .................................... GACCGTTCAAAAAAATTAATGACATTATAT 239150 36 100.0 30 .................................... AATGGTTTAGAGGAACACTAACATTCTGTT 239216 36 100.0 29 .................................... TACAGTAGAAGTTGATAGAGATACTACAT 239281 36 100.0 29 .................................... TTTTATTGTAGTTTTTGACACTTCGCAAT 239346 36 100.0 29 .................................... TGATGAAGCTAACATCCGTTATGAAACAA 239411 36 100.0 30 .................................... GTAATGTAAAAAATAATTTTAATACTTACA 239477 36 100.0 30 .................................... AATTCAACACTCACGAAGCGTGGGAAGAGT 239543 36 100.0 31 .................................... GAATAACCAAACGCCTTTAAACCAACGTTTA 239610 36 100.0 30 .................................... CCATATGTTCCAATTGTTCCATAGTATATA 239676 36 100.0 30 .................................... AAGGTTATCAAGAAATAGATAATATTGATG 239742 36 100.0 30 .................................... GGATTGATTAAATATGACTGAAACAATTAA 239808 36 91.7 30 ........................A......A.A.. CCAATGGATTGCCTTACTTTACTCGCGGGC 239874 35 72.2 0 .............AC..AA....TA..G.-...T.A | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 98.6 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAGAC # Left flank : AGCTTTATTGGAGTCACTAGGAGTTAAAATTATTGTTTTAACAGGATCGCTGCATTTTATGTCTAAAGAATGGAAATTTAATAATTATATAAGAAATGAAGAACAAAAGATAAATAATGATTTTATTGATAAACTACTTTGGCATGCACCTCTTAATTATCGAAGAAAAGAATTAGAAGAAAGTTTAAACCGTTTTATTTTAACTTATCATGATAAAATCGAAGTAAATCCTACAATATCTAATTATCAAATATCACAAATTATGTTATTTAATTCTATTGATTTGTATGTAGGAATATCATATTTACAACATTGTAATCATAAATTTAAGTTAAATCTTAAAGATGACCAATTATCAGAAAGTATTAAAAAATATATTGATCAATTATCAAAATATTAATTGATTAACTACATATATTAGATTTATTATTAAAGTAATGGGGGAGTTTAGATAGCTTCCCAGTACGTACTAAATTTTCTCTTACTAAATAGTGCTAGAG # Right flank : AATATTTAAATGTTTAATTAGTTTTGATTTCTAATATTTAAATTTAAATGAAGTTGAGAGGGGATAATATACTCGGAAAATCAGTAATCTTGGTTAAATGAAAAAAGGCTATTTTGAGTAATATATCTATAAAATACATAAGTCAATTAATAGTTGACTTTATGCCACTGTTAGAAATATAATATAGTTGTAGAACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCAACAATTTATTGTTGGGATTTTTTGTTTGAAAAATAATTATTTGTTAATCAAAAACGTCAACGAAGTTATTCTCTTCGCTAACGTTAATTTTATTTTTTAAATTTACTAGTTCTCATTTTCACTGGTAATTTTACCTAATGTATAACTACCGGCAAATCCAATTATCAATAATACGATTGCTATTAACCACTCAAATGAACCACTAGGTAAACCAGGGAATACGGCATAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //