Array 1 4084833-4085580 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019007.1 Enterobacter oligotrophicus strain CCA6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4084833 28 100.0 32 ............................ GAGAGATCAGGATAAACCAACAGATCATCAAA 4084893 28 100.0 32 ............................ GCGAGCATCGCGTTCAAGCATACGCTGAAGCT 4084953 28 100.0 32 ............................ GAATACATCGAGATCCACAGGGTCACCCTGGT 4085013 28 100.0 32 ............................ TCTGGCGCAGAAGGCCAGCAAAAACATGACGC 4085073 28 100.0 32 ............................ ACATCCTTCGCAGTGAAGGTCCGGTGCGTTTC 4085133 28 100.0 32 ............................ GGCGCGAAGGTACTGCGCTGGAAGGAGGGCTG 4085193 28 100.0 32 ............................ GATCAGCGCCGGAAACAGCGTCGGCCTGTTCA 4085253 28 100.0 32 ............................ AGTAGCAAAGCACAGCCAGACAAAAACCAACC 4085313 28 100.0 32 ............................ GAACGTACATGAGCGGGTAAAACTGGAATTAC 4085373 28 100.0 32 ............................ TCCGAACGTCGGATCATGCTGCATGCTTTGAG 4085433 28 96.4 32 ...........C................ CCTGTCATATCGTCGTTAATTGTTATCACGCG 4085493 28 100.0 32 ............................ ACGTTACCGCAAAATGTATCCTGGATTTGTTC 4085553 28 89.3 0 ..C.......T.A............... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : GCTCCCGCAAACTCAACCCGTTTGTCGTTGTCTTGGTGCTTATCTGGAGGAAGTCAAAACCGGCCTTGTGGAATCGATGAGTGATTTTCAGATAGTAGAATTTGAGGAAGAAGAGGAGCCACCGCGGCAAAAAGAGTGGTTGCTGGAAGGTACTGAAACCAAGTGCGATTACTGCCGCGCATTAAATCACGTGCTGCTGGTATCGCATTTTGACCGCGAGATGCTGCCGTACCTGACGGGATTATTGCACGACATTACTCACTCAATGGCGGCAGATGTGGTTGCGCCTCGCAGTGCAGAAACCGTTATCCATATTATTCCCTGATTATTTTGTCGCGTCGGGGGAGTTGTTTCGATGCATGCAGGTTAAACCCTTTTTTCTGGCGGTTTTATAACTCATTGATTTATATGATGAGGATTTGCGCTTTGAAAAAAAGGGTTTAATGCGCATGTATTGATTATTTTCTTATACAACAATAAGATGGCGAGGTTTCCTTTCA # Right flank : ACACTCAATGCCCATCTGGACGAAGGCGTTAATGTTCAACGCCACACAGCCCCTCTCGCTAGAAAGGTCTTGCAATTACATGCTCCACATCGATCATTCACAAGAATCCATCACTATTATCTCTGTCATTTTTATTTAAATCAAAAAACATATCCAATTCATAAATATAATCAAAGGAATGCATTATTCATTGGGATGATAAATGCGCTATTAAACACACTTTCTGTTTTATTACCCCTCTGATTATTATTCATTTGATATATATCACATTTGTCTTTGTCTAAAACTCGCTAACATATCCTGCATTCAATTCTTTGAAATAAAAGCCTTAACATGCCCGCAAACAGCATCACGTCTGGTGATTTAAAAACCATACTCCACTCTAAACGCGCCAATATCTATTATCTGGAGAAATGTCGTATTCAGGTAAATGGTGGGCGGGTTGAATATGTCACCCAGAAAGGGAAAGAGTCATTTTTCTGGAACATTCCCATCGCCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4095133-4095280 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019007.1 Enterobacter oligotrophicus strain CCA6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4095133 28 100.0 32 ............................ AGCAGCGGCTCCGAAGCTGCGCGGCACAGTTC 4095193 28 100.0 32 ............................ AACGCGTATCGGTTGTACGAATCATATCAATA 4095253 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACGTGCCACGCGCTCGCTTTCATCGGGCGTCAGCGTTCGCCCTGCGCTTTTGCGGCGAGCGACATTGCGCTCGTTAATCCCCGTCACGCGAAGGATGTCCGCTTTCGACATCGACGTCCATTCATGAATGTTATCGAGGATACTGACGGGTAAACCTTGATTGAGGTATTCAACTAACCGCATACCACGGTTTGCAGGTAAACCGGCATAGCGCCAAAGCGCGTTGTCAGCAGGTTTCTGCGCGGGAACCCATGTTCTCATAGTACCTCCTGATTGAAGTCATTTGTCATAGGTTAGTGTAGTCATTTGTCGGGGTTTTTGGAATGGATGTTTTTTGCGCGGGGCGGTGGAAGAGAATTCAGCTGTTTACCCCTAATTTTGGAGTGATATGTAATGTATTGATTTATATTGGAAATATTGTGGGTGGGGTAAAATAGGATAGGAATAGGGTTTTAGCTTTTTTTGTATGAAAATCATAATGGTAAGGGGGTATTATTTCA # Right flank : AAATAGAAAATAAGGTCTTCACACCCTTACATTTTGCACTGTCGAACAGCCAGCGCTGAGCTGAAAAGAAACCTCAAATAACGGTTTAAGTAATCGACCGCACGACCAAAAAATAAGGCCGGGACTATCCCGGCCTTATTTAATATTCATCTGCCCTTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCAGCG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //