Array 1 16441-18046 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHC01000064.1 Vibrio cholerae strain N2771 NODE_216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 16441 32 100.0 33 ................................ TCAACAAAGATTATCTCGGATGGGCTCAGGCAC 16506 32 100.0 34 ................................ ACGGCTTACCCAAGAAAAAACGTTAAATATATTT 16572 32 100.0 33 ................................ ATTTCAACTACCCAACTGATTTTATGCTTATAG 16637 32 100.0 34 ................................ ATAACAACTTGATTCAGCGTGCGCGTTCCATCTG 16703 32 100.0 34 ................................ TATTTCCTCTATGCCAATCAGAAGACCGTCGCAA 16769 32 100.0 33 ................................ TTCCCAAGGCAATTGCATATGCTTGGTGCAGAA 16834 32 100.0 34 ................................ GTTTTCGCCCTTTTGGGCAACGCGCATCAAAATG 16900 32 100.0 34 ................................ AAGAGTCTGCAGAGCGCGAGCAGAAAGTCGAAAG 16966 32 100.0 34 ................................ CCTGACGTCTCAACCATTTGGGACAACGTAAAGG 17032 32 100.0 34 ................................ CAAGCGAAAGCGTCATTAATTGGTGTAACGGTTC 17098 32 100.0 34 ................................ GCCTTGCGTACTGGCGTTCCCCTTTTTGATTTCG 17164 32 100.0 34 ................................ TGATGGACTTGAGCTTACACTTACTGACGAACAA 17230 32 100.0 34 ................................ CGTAAGATCTTCGCCCTGTGTGGCTGCTACAGCC 17296 32 100.0 33 ................................ TGGCAATCGTTCTATACCTGTATGGAACTTGCG 17361 32 100.0 35 ................................ AAGCATCAAGCTGATACTGAAAGAGTAACCGTTTC 17428 32 100.0 33 ................................ CCATGCTTTTAGCTCTAGCGCCCAACGTTCCGC 17493 32 100.0 35 ................................ TGAGTTGATCGGCTCAAAACGCAGGCATGTACTTG 17560 32 96.9 33 ...............................C ATGAATCCTTCAAAGGTGATCCAGCTGCGTCCC 17625 32 96.9 33 ...............................C CATCATCTTGAGTGGACCCCAACGCGTGGTCAG 17690 32 96.9 33 ...............................C AGTTACAGCACAAGTAAAAAAAGGCGAAAGAAA 17755 32 100.0 33 ................................ ATGGTCACTTAAGCTCAAATGACATTAGCTCAA 17820 32 100.0 33 ................................ TAACCGCTGCAACATACGCAGCGAAACGCCAGC 17885 32 96.9 33 ...............................C AGAATAAGGCTGAAGTAAAAAAGGTAATTGTTG 17950 32 96.9 33 ...............................C TCTACGCTCACGATGATGCGGTAGACCAGCTCA 18015 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 25 32 99.4 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTATTGGTCACCTACGATGTATCCTTTGCCAGTGAAGATGGTCAAAAACGCCTCAGACAATTAGCAAAGGTATGTTTAGATAATGGAGTAAGGGTGCAGTATTCTGTATTTGAATGCGACATAGATGCCGCGCAATGGCTGCGCTTTAAAAATAAGCTGCTGTCAATTTACGACCCTGAAGTAGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGTGCGAAAGAAGCCATAGATATATTCAGAGATACCCTAATATTATAGTCGCTAGGCTTGAGTTCTCAGTAAAATACTGGGGATCTAGCGATTGCATAAGCTCTTTAAAAATATAGGAAATAATTATCTGTATAGATTCACACAAAGTAGTTTTGTGCTACCGCGCAAAGTTAGCGGTAACCAATAGAGTGTGTTAGTTTGTACGTGCCTCTAAGAAGAGGCA # Right flank : TAAGTATTGTCACATTATTGCAGGCAATTTGTTGCCCGTGAGCAAGTTTTTGCCTCGCCAATTTTCGCGTTATCATGCGCTTAAAGCAGAATAAGCGAGGATGTCAAAGCCATGACAAAAGATATTAGTCGGTACAATATGCGTTGGGTTGAGGGGGACACTTTACCTGAAGCTCCTAAGCCTAAACTTTCTCCGAAAGAAAGGTATTTAAAGCAACTCCAAGAGAATCATCGACAATCTGAAGAAACGTGGTCTTATGTCCAAGCAAACGAAGACCGTTATGCATTACAAAGAGCGGATGTCCTTACTCGCCGAAATGCCTCACAAATGCTTGATGACTCTCTTCGTGACTCACTAAGTTAGCAGTGTTCACTTGAAGAAGAAATGGCAAAGAATCATCAACATGTTCTTATTGCAGACTTAGAAGATGCCCATAAAATCTTGCACAACATTTGGTTGGAGTCTGGTCGTGATGTTGCTGCAATTGCTGCGAGTATCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 5535-1545 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHC01000049.1 Vibrio cholerae strain N2771 NODE_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5534 28 100.0 32 ............................ CTAATTCCTCTTGCCGCTGATTGCGGTTTTAC 5474 28 100.0 32 ............................ GATTGGTTGATAGAAAATATTCACCTAAGCAA 5414 28 100.0 32 ............................ GCGACCAGTTCGCCACCGCTGATAGGTACTAT 5354 28 100.0 32 ............................ TGTTACAAGCTAAAACCCTCGCGTTACAACCA 5294 28 100.0 32 ............................ ATTTCTTCAAGGTGTCTGTCCTTGATGAGCAC 5234 28 100.0 32 ............................ AAATGTTTCATGTTTTTGTCTTTGAACCACCA 5174 28 100.0 32 ............................ CGGTTCGCCTTTTGCGGTTATATTTACTTTCG 5114 28 100.0 32 ............................ TAAAGGCTCAAGGCAATGCATCACACTTGTTT 5054 28 100.0 32 ............................ TCTCGAATTGAAAACCGCATGGCCATGAAAAT 4994 28 100.0 32 ............................ AGTAAAACAGCGCCTGCTTGCTGAATTAGAGC 4934 28 100.0 32 ............................ TTCAAACGGCCCCCAAGAGCTGCGCCAGTGCT 4874 28 100.0 32 ............................ TGATGAAGCGTTTTTTAAACGCAAGAATGGCG 4814 28 100.0 32 ............................ TCTCTCTGCATGAACAGCATAAGCGCTTTAAA 4754 28 100.0 32 ............................ TTGCTGTCTGAGCTGATGATTAGCTTAGCAAA 4694 28 100.0 32 ............................ TCCTAAAGTTTACAAATATGTTCGACAGTTTG 4634 28 100.0 32 ............................ ATTCACATCTAAACTTCTGATTTATAATAAAT 4574 28 100.0 32 ............................ TGAATGGGCGCGATTCCTCACCGCCGCCGTTG 4514 28 100.0 32 ............................ GATCAGCTCTTTCGCGGTTTCCATTGTCGATT 4454 28 100.0 32 ............................ GTTGCCATAGATACACCATACCCACCAACAAC 4394 28 100.0 32 ............................ ACGCAATATTTCTACACATTCATCAGTTGATA 4334 28 100.0 32 ............................ TGTTTGAGAATGTCGTTACTTGCTAGATACAT 4274 28 100.0 32 ............................ AAACATCCTGCGCGATATAAGCTCGAAGGTGT 4214 28 100.0 32 ............................ AGCTCCCCACTTGGCAGCAGTGCCAACACCGC 4154 28 100.0 32 ............................ TTTGTGACCGTGAGACGTGAAAAAACGGCCAA 4094 28 100.0 32 ............................ GTTCATTTTTGGCGAGTTGGCTAAAAGGACTG 4034 28 100.0 32 ............................ AAGCTAAAACAATTCGCACAAACTCAAGAGTT 3974 28 100.0 32 ............................ GCTTCTAGCGCTTTTGTTGGCTTGATGGGTAA 3914 28 100.0 32 ............................ ATTAAGACAGGTATTGATAACTTAAATGGTCT 3854 28 100.0 32 ............................ TTTTTGAATGGACTTGCAATAGTGGAGCGCTC 3794 28 100.0 32 ............................ TCATAGATCGCTTTCATTTTGTAGCGCCCAAC 3734 28 100.0 32 ............................ GCAAGCATTTGTTTTTCAAATTCAGTCATTTC 3674 28 100.0 32 ............................ CGAAAGGGCTAGCAACCGAAAGGACAGATAAA 3614 28 100.0 32 ............................ TTGAGCTTTTAGACCATTTAAGGCATTTCTAT 3554 28 100.0 32 ............................ TCTAGTTAGTATTTAACTTGTCCAAAAGAGCT 3494 28 100.0 32 ............................ AAATTCCAAGGCTTTTTCTAGCGTCAGCTCAA 3434 28 100.0 32 ............................ TCACGCGAGTTGTTTGAAAATTTCTTTTTGCA 3374 28 100.0 32 ............................ AAACTCAACACGGGCGAATACAAAGAGCACTC 3314 28 100.0 32 ............................ ACCACCAGTGCCGCCACCTGACCCCGAATCAC 3254 28 100.0 32 ............................ TTTATCCGATTGGCGCGTGGTGTGTCCGGTGT 3194 28 100.0 32 ............................ TTTTGCAAAAAGGCGGTGACGAGTTTGGGGGC 3134 28 100.0 32 ............................ TGACGTGTTGGAAACAAAAACAAAAGGAACCT 3074 28 100.0 32 ............................ TCTAACTTGTCCATTTGGCTGATGCGCATGTT 3014 28 100.0 32 ............................ TGAAACGCTTTCTATCAGGTCGCCCAGCGTCA 2954 28 100.0 32 ............................ TTTATAAAGGTCGCGTATCAAGGTCATTAGCT 2894 28 100.0 32 ............................ TACATCAGCGAAGAGAAATACATCGATGTTTC 2834 28 100.0 32 ............................ TAAGGCATTGACCGTTTCGGATACTGTGCAAT 2774 28 100.0 33 ............................ CTTATGGGGTCGCGTCAAGGGCTTACTGACGGC 2713 28 100.0 32 ............................ TGAATATCAGCCAGCGCTTCGTGCTTATATTC 2653 28 100.0 32 ............................ TGCGCCCTGTTCTTTGTGCGATCAACTGTTTC 2593 28 100.0 32 ............................ TCGCGTTTTTCCTATCATCCTCTTGGAATTGC 2533 28 100.0 33 ............................ TATACAGGGGTGTTCCCCACGAACCCCCTTCGT 2472 28 100.0 32 ............................ ACTTTTGACGACTTGCACCGGATTGCGCTTCA 2412 28 100.0 32 ............................ TGTAATTAACGGCGTGTGGCTGATTCTGGTTT 2352 28 100.0 32 ............................ TCCAAAGCGCTCATAGTCTTAAGTCTTGCCAC 2292 28 96.4 32 ........T................... CCAAACCCTTGCCGCTAAAGGCTTGAGCGCCA 2232 28 100.0 32 ............................ TTAAAGTTAAAAGTTGTTCAGGCGATGGGCGA 2172 28 100.0 32 ............................ ACAGATCGCCCCGACCAATATAACGGCAATAG 2112 28 100.0 32 ............................ ATCCATCTTGTTCGCGCCGCTGGTTAAGCGAA 2052 28 100.0 32 ............................ TTCTTCAAGCTTTAAAACGTCGAACAGTGTGA 1992 28 100.0 32 ............................ CATAGCCTTTGCACACTGACCACGTTTACCCT 1932 28 100.0 32 ............................ AATCTTCTAAATTCAGTCGACTTACGCGCTGA 1872 28 100.0 32 ............................ TCAATATTGGGTGTCACTCGGGGTACAGTATC 1812 28 100.0 32 ............................ TCGATAAAAACCCAATCACAAAAGAAAAGATC 1752 28 100.0 32 ............................ TTCAACTTACGCACCGCTTCTGCGTAGTTCTG 1692 28 96.4 32 ...........T................ GTAAACACTCAAACGGGTATTTATGACCTGAC 1632 28 96.4 32 ...........T................ TTCAAAAAACTGCTTGAAAATAAAATGGGGGC 1572 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGCAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCTAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCTGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTAGTTATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //