Array 1 161073-160818 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOU01000026.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 161072 28 92.9 33 .C...T...................... GGGGGAGGGAAGGGCCGCGAGTAGCCGCAGGTC 161011 28 100.0 33 ............................ GGGCCAGCGCTCCCCCGCCATGTACTTCGACAA 160950 28 100.0 33 ............................ GATTGTCTGCTTCAACCGAAAGTGCCGGGACCG G [160933] 160888 28 78.6 14 ..................AA.CC.CC.. GTGACCCTGCCCCA 160846 28 53.6 0 AC.....A.C........AACCCTCCG. | A [160834] ========== ====== ====== ====== ============================ ================================= ================== 5 28 85.0 28 GTCGGCCCCGCGCCAGCGGGGGTGGTTC # Left flank : AGCGCTCCCAAGGTACGACTTCTGAGTGAAATGTCAATGAAACAAACGGAGTTGATTACAGGAGTGGGCGGCGATCAGGGAATCTGCCGTGAGCCGGGAGTCACGGGAGGCTTTGGCGGCTTCGGTGGCACGACAGTCAGAACCCTGCCCGAAACCGGAAAGGGTGCGGCCTGCCTGCGTTCCGCGTAATTCGGAGCTCAGAGGGCCACGACACTGCGGGTGCCGATGAATCATCCACGCAGGTTGGGAGCCTGATCACGGATCTTCGGTTCTCCTCGGCATTCGCCCAGGTGTGTTCGCCTGCGCAGGGACCCGGCGCGGCATCAGGGTCTGTCGTGCTGCTGCGCCTTGCCCACCTCGCCGCGACCAACGCCCTGGCGTTCCTACGCCTCCTGCCGATGAACGACGAGTCCACGCTGACCAGGCTGAGATCGACATCGTCGCGGGCGGCTGCCTCGGCGATCGTCGCGTCCACGAGGGCCCGGAAGACCTCGTCACGC # Right flank : TGTCCGACCACACCCCAAGGAACCTGGAGCACCCGGCCCACGCGCCGGGCCCCTGGCCATGCCCTCCTGGCACCGAGCATCCGCCAACCACATCAACCCGCCTCAGCCGACCAACCGAAACGCGGAGGCTGACTGGCGGATGACTCTCGGCCCGTGGCGGCGGTGTGCACCGGCGATACCTGCCTGGAGATGACCTGGGTGAGGTCGGCAGGCCCCGGCTGGCGCCATGGGCGGGCGCGGCGATCCCTCGTCCGGCGGCCGTCCGGGATGCCCCGGGCGACCAGTCGACCAGCGGATGGAGGACGCCCTTCCCGCCCTGGTGATCGCCCCGCCGGCGGGCCCCGTCACCGTGGCCGGTGTCGCCGGCCGGACCGCGCCCCGGCCGGCGACACCGCCCTCACCACACCCGCGCGACCCGCCGGCGGACGACGTAGACGATGGTGAGAAGGGCGAACCAGACCGCACCGGTGTACAGGCCCACTCGTGTGTCACTCTCGAAT # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:0, 6:0.25, 7:-0.46, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [1,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14425-13662 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOU01000088.1 Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14424 29 100.0 32 ............................. CCGGATCCGTTGGGGCGCCGGGTGAATCCGCC 14363 29 100.0 32 ............................. GCGGCCTGACCAACATCGACTGCCGCCCGGCT 14302 29 100.0 32 ............................. CCGCCGCCCATGTCGGACGCCTCGGGGCGCGG 14241 29 100.0 32 ............................. CTCACCCAGGAGGGGCTGACCGCCGCCCGGCA 14180 29 96.6 32 ...........A................. CCGAGGTCCTGGAGCTGCTTGCGGGCCTCAGC 14119 29 96.6 32 ...........A................. GAGCCCAGGGTCAGGAGTACGTGGGCTGGGCC 14058 29 93.1 32 ...........A..............T.. TGGGACTCCACCCCGGCCAGCGAGGCGAAGAA 13997 29 96.6 32 .......T..................... GGCCCGAGCGCAAGAAGGACCGGTGAGCCTGA 13936 29 89.7 32 ...........AG.............T.. GAGCCTCAGCCGGGGCAGGCTCAGTCCACGGC G [13927] 13874 29 89.7 32 ...........A..TA............. AACCTGCGCCGCATCTGGGAGACCGACCCGGA 13813 29 93.1 32 ...........A..T.............. TCCGTCTCTCCGGCCCGCAGCTGGTCCAGCGC 13752 29 89.7 32 .......T...AT................ GGCCCGAGCGCAAGAAGGACCGGTGAGCCTGA 13691 29 93.1 0 ...........AG................ | G [13681] ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.2 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCAGAAAGAACGCCGCATGCCTGGCGCGCCCGGAACGCCATGTGGGTGGATTCCCGGCAGGCACCGGTCGGTACGCTCAGGGCAGGCGGCCGGGCATTGGGTTCAGCGGGTGGGGGTGTAGGCGATGCGGGCGCCACAGCAGCCGTCGGCGAGAGCAGTGAGAACTGCTGCTTCGCTGGGGACCGCCGACAGGCCTCAGCGGGACTTCACGACGCAGACACCGAGGCGAAGCCCACGTCGCCGGACGCGGACCGCGAGACATGCAAGATGCGCACATTCGCGCCCGACACTTCTGTGTTGGCCGCCACGATCAGCTTCGGCGCGCTCCAGTGCGACTTGGTGCAGGCCACCAGCGCCCCGAAACCCGGCCGGAGCAAGGCGTCCAAGCGCAGCCACTTCGGCAGGCATGCCCACAATGATGCAAGAAGTCTGAATTGACGGAATCGGTGAAAGTCCGGGAAACCGACCTCTCCCTGTGCCCAATCCACAGGTCACACAGT # Right flank : CCGCTCCGCGCCATCTGCCAGGAGCTGGGCATCCTCAACGGCGTGGGCAAACCCGCGCTCCACCCCCACCGTTTTCGGCACACCCTGGGCACCCAACTCGCTGAAAAGGGCGCCCGCGTCCAGACCATCATGAAGGTCTTCGGACACAAGAGCCCCGGTATGTCGATGACCTACACGCACATCTCTGACCCCACGGTGCTGGCCGACTACCAGGCCGTGCTCCAGCCCGGCGCGGTCATCGCCGGTCCACTCGCCGACACCCTGCGCTCCGGACTCGACCGGGACGCGCTGGACTGGCTCAAGACCAACTTCTACAAGACCGAACTCGAACTTGGCCGCTGCCTGCGCCTGCCCCAGGAAGGCCCCTGCGAGTGTGACCTCTACCTGACCTGCGCGAAGTTCATCACCGCACCCCAGTACGCGCCCCGGCTGCGTGAACGGCTCTGCATTGAGCGGCAGTTGACCACCGATGTCAGGGACCGCGGCTGGGACCGCGAGAT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //