Array 1 1034801-1034608 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013015.1 Candidatus Desulfofervidus auxilii strain HS1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1034800 35 100.0 44 ................................... ACTCTATCGGAGGAAGATGAATCTCAAGTTCTCCGACTTTATAA 1034721 35 100.0 44 ................................... ACGGAATCAGTACATTCATTTCATTCTGTACATTCCCCCTGTAC 1034642 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 3 35 100.0 44 GTGTGAAAACAGGTAAGAGCTTGAGGGCGATTGCG # Left flank : CAAAACACTCAATATATACCCTTTCATTATGATAGATGATGTTATATGTAATTTCTTATGATATTCCTGATGATGAAAGAAGACTTAAGGTAGCAAAAATTCTCCTTGACTTTGGGCGCAGAGTGCAGTATTCTGTGTTTGAAGCACATTTGGACTGGAGCTCTTTGGAAAATTTAAAAGAGAGACTGCAAAAGGTTATTTCCCAGGCTGAGGACAGTATTCGTATTTATCGGATATGTGGTGAGTGTAAAAAGTTCATTGTCATCCTGGGAGAGGGAATGGTTACACAAGAGCCAGATGTTTACGTTATCTAAAAATGGAGTAGAATTTTTAAGCAGGCCTCAGAATGGGGAAGGTTAGTATTGGTTGTAAGTACCGATAAAGAGGTTGAAAAATAGAGACAAGCAGGTTTCACTGGTCTAGTCAGAAGGGGTTAGAAAGAGAGGTTAGTATTTTGGAGTTTAAAAAGGCACAAGTTTCCTGCATTAAAAACAGGAACT # Right flank : GAAATTTGGGAATGAGGGCTGGAGAATGCAGAATAAAAAATTCTGCACTTCGATTACTTTGGATGGCTAAAAGGAAGGTCCATAGTAAAGTTTTCATTGAAAAATCTATAAAGAAATCAAACCACCAGGGTTGACTCTATTGTTTTGATACCATGACGGCTGATTCAATTGGATTTCCGAAATGCCTCTTCTATTTCTTGCCCTGTCCCACTAGAAGGAAAGAACAGGTTTTTGTATCTAGTGAGCCTTTTGATATATTGAAACTCCTTTGTAGAATTCTTACCATTTCACTACGCAGAAAGCCTCGCCCTTTAGGACGGAGAGGATATCAGGAGAGAAAAAAAATTGTGCAGGCAGAGAGAAAAAGTCCTGAGAGTGAAAAAATACCGGATTTTTATTTAGGATTCTTTCCTCAGAAAAGCCCGTCTGCTCACCGTCATAAGAAATAGAGCGAAAATAAAAGCAACTTTCCCAAAATTTCAGCATTTCCTCTATCACAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAAAACAGGTAAGAGCTTGAGGGCGATTGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 1048552-1048295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013015.1 Candidatus Desulfofervidus auxilii strain HS1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1048551 37 100.0 36 ..................................... TGTTTAAATACCGCAAGTATTTCCATAATTTTTTGT 1048478 37 100.0 37 ..................................... TTTAACTCCTTGACTTCTTTTGCCAAATCATTACTTG 1048404 37 100.0 36 ..................................... CCAAGAGCTGCCTGCCAGTAGCAGACCGAGAACTCG 1048331 37 91.9 0 ..................................GCT | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 37 GTTGCACTAATGGTAAGAGTCTGAGGACGATTGAAAC # Left flank : ACTGAAGAATCATAAGTTATTTTCATAATTTTATTCCTTAAGGTGTTTTCACCTTTTAGGTGTAAGGTAATCTTTCAAAATTGCTTTATTATAGCACACCTGCCTGTTCGGCAGACAGGCTTGCGGGGTTTCTTGTAGGACAAACAAGGATTTGGGGATAAATTATCAATTGACTTATCGTGAACATTGTGATAGGAAAGATTTGTTCTTTTGAAAATTGAATATGGAGTATCTTTACATTTTTTAACTTTCCCGCCGGGAAAGTCCCCTTCCGTAAGGGAGGAGTAGTTCACATTAAAGAAGTGTGAAAACATTAGGTACTTACTTCAATTTTCATCATAATTTTTTGCAAAGTCGGGTTGGTTCTTGGCATGAGCGGCCTTTTGGGATTAAACATTTTTTCGCAAACCTCGGGGATAAAAATGCAGAAAATAGGTTTTCGGAAAAAAGGCAATTCCCCAGCTTTAGGTTGTGCAGAAATGTTGGGAAGTTGTGGTAGC # Right flank : AAAACTTATGTATCGCCGAAATAAAGGAGCGGGTAGATGCATAAAAGGTTAGCCCAAGAGGTATCAGGCGTTACATTTGCGAAAACACGTTATTATCAGCGCAGCTTATTTTCAGACAAACTAGAACCTATTCCTATTGAGGTCAACCAGGAACCACAAGACGAAGAACTCAGAGTTGATGAAGGTATCTCATTGATAAAAACTGATAGCCTTTCTCAGTTAATGGTATCTGGCTATGGACTGAAACTCAGCAAGAAAAGAGAACGATTACTTGTTAAAAGAATTTAATGGGGAAAGCAATCATGTTCACCTCTTGGTAACATATCCACCAAAAGTAGCTGTATCTAAATTAGTTAATTCGCTGAAAGGAGTATCGTCAAGAAAGCTAAAACAGGTACATCCAGAATTGAGGCAGTTTTACTGGAAAAACGCCCTGTGGTCACCAAGCTATTTTGCAGGTTCTTGTGGCGGAGCTCCCTTGGAAGTCGTAAGAGAGTATA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTAATGGTAAGAGTCTGAGGACGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 1582463-1585621 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013015.1 Candidatus Desulfofervidus auxilii strain HS1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1582463 30 100.0 37 .............................. CTTAGTGAGAATGCAGACGCCAAACAGGAAGAGCGGA 1582530 30 100.0 38 .............................. CGTCAAATGCAAAGCCTAACCTTCTTAAAAAGGTTTCA 1582598 30 100.0 37 .............................. ACAACATCATGGAAATACACTGAGGCACTTCTAGGCA 1582665 30 100.0 37 .............................. CATCCTTGCTCCACCATGCTCTGTAAGCTTCTCGTAA 1582732 30 100.0 37 .............................. TTTTGCTGCCCACTCTGCAAACTCTTCGGGGAAGTCT 1582799 30 100.0 35 .............................. ATGTATTCCATTGCTTTCTCTTGTATCTCTTCCCA 1582864 30 100.0 36 .............................. CAAGAAATGTAGAGCGAGAAATTATCTTTTTTCTAG 1582930 30 100.0 37 .............................. AACCAATTGTTTTTATTACTCCTGCAAGGTTTTTAAA 1582997 30 100.0 36 .............................. AACCCAGTATGGCCACTGCACTAAGTACCCTAGGGT 1583063 30 100.0 37 .............................. CACTAAACCCATAATCAAATGCCGTCATAATGTTCAA 1583130 30 100.0 37 .............................. AGTGCACGAAGACGCAGATAGTCATCCACAGTAAGTA 1583197 30 100.0 37 .............................. CCAATGGCCAAAGAGCCTCAAACTGAGACTTCTTCAG 1583264 30 100.0 36 .............................. TCAAAGATAAAACTTTTGATAGGACATCCCATACCT 1583330 30 100.0 37 .............................. ATCCTCTTCCTCATCCATCACATACATGGGGGTGCTT 1583397 30 100.0 37 .............................. TGTTGCAAGTAGGGGTAGGGGATATGGTAGAAGAGCT 1583464 30 100.0 35 .............................. GCCTCAAAATTTAACTCTCCATCATTAACTTCTTC 1583529 30 100.0 37 .............................. TATGAGTTATGTGTATGAGTTGGGGTATAAAGGGGGG 1583596 30 100.0 37 .............................. GGGGAGAGAAAACAATTATGGTGCAGTGGGGGGATAA 1583663 30 100.0 36 .............................. CCATTTACCTCATCAAAACAGTCTAACCAAAATCCG 1583729 30 100.0 37 .............................. ACTTGTCTCGCCAGAAAGGCATGATGTCCAAGGCTCT 1583796 30 100.0 37 .............................. AGTTATATAGCAGTTTTAATTCTGGCTTTTTTCATTT 1583863 30 100.0 35 .............................. TCTATCAAAAACCACTTTTCACATATCTCAATCAC 1583928 30 100.0 37 .............................. TGGCTTCCTTTTTCTGATGCTCAGTTTGGTGGCGTGT 1583995 30 100.0 36 .............................. CCTTTTTGAAAATTCTAGAGCATTTACCACCGCATT 1584061 30 100.0 37 .............................. CTTCATGCTGGGTAAGATTTAAAATTTTAACCATTTT 1584128 30 100.0 36 .............................. GCAGGATAGGCCCCTGCACTAGAGGGATATATGGAG 1584194 30 100.0 37 .............................. CATATTTACCTTGCCTAACACAACTGTTTTCTGCTGA 1584261 30 100.0 37 .............................. AACTCTACTGGACGGCCTCGCCATGAGGTAACATCCA 1584328 30 100.0 35 .............................. TTTGTAAGTCCTCTTGCTATCATTTTCAAGACAGA 1584393 30 100.0 37 .............................. CCGATTTCCTTATATATGGTTTTATATTTGGATACGA 1584460 30 100.0 38 .............................. GAAAGATGATTAGTGATATGTATAGGACAGCCTCCATA 1584528 30 100.0 36 .............................. GAGCTGGTTATAACTAGCACTTATGACGGTAATCAC 1584594 30 100.0 36 .............................. ACGGCCAAACCAATATCCAATGTCCTCTAGCACTTC 1584660 30 100.0 37 .............................. TGACATTAAAGATAGATGTCAAGCCCTTTTCCAGTTT 1584727 30 100.0 37 .............................. AGATTTTGGATATGTTAACAAGGATTTGTATTTTTGG 1584794 30 100.0 36 .............................. CTACTTTAAAAGAGAAGATAAAGTTGCAGACAGCGA 1584860 30 100.0 38 .............................. TTCCAGAGGGCTGGGATATTTGCATACAAAGCCAAGTT 1584928 30 100.0 39 .............................. ATCCCCTCTGCCCAGCTATACACGTCTTTTACAGCTCCT 1584997 30 100.0 37 .............................. TTGTATCTTTTAACCCACTGCTCACCCATTTTATTCC 1585064 30 100.0 37 .............................. TCAGCTCTATAATCCTTTAGACCAAATATCTCTAAGT 1585131 30 100.0 35 .............................. AACAAATCCCTAGCCTCAATCAGCTCCTCATCTGC 1585196 30 96.7 36 .................A............ TATGTGGTAACACCTATATCCACCACCGCTGTCCTC 1585262 30 96.7 36 .................A............ CACAAACAGACATTCAACCCCATCTTAGGCAGGATA 1585328 30 96.7 36 .................A............ GAAAAAGGAAGCCACAGACCATCATACTGGGTAAAA 1585394 30 96.7 36 .................A............ GTTCATAAAATGCCTTATCTAACCTCTAATCTACAC 1585460 30 96.7 37 .................A............ TGACCCTAGGACTAATACTTTTAGGAAGAAAAATAGA 1585527 30 96.7 34 .................A............ CTCTCCTTACTAATCACCAGTCACAAGTCACCAG 1585591 30 76.7 0 .....T............G.A....T.GCT | A [1585608] ========== ====== ====== ====== ============================== ======================================= ================== 48 30 99.1 37 GTTTTGAGCCTACCTATGAGGAATTGAAAC # Left flank : GAGGTTCTATAGAAATGTTTGTCATCATGGTTTATGATGTAGAGGTAAAGCGGGTAAACAAGGTATTAAAAACAGGGCGTAAATTTCTCCACTGGGTGCAAAACTCGGTGTTAGAAGGAGACATCAGCCCCGCCAAGCTAGAAAAACTAAGAACTGAATTAAAGCATATTATTAATGAGGAAAAAGACTCGGTGATTTTCTACACCTTCCGTACCACTCGTTACAGCAGCCGCGAAATTATGGGCATTCAAAAAGGTGGAGAGGAATGTATTTTGTGATTGGTGGCTAGTAGATAGCTGGATGTAAGAGTAAAGATTTTACGTATTTAATGTTTATCGTCAATGCCTCCTAGTGTAAAAAGACCCAGGAAACGACGAGAGGCATAAAAATAACCAAAAGTATTGACACATCAGTAAAACCTTGCTAAAGGAAAATGAATAAGAGAGCTATTTTGACAATTTGGCCGGGAACGACAACTAGCAATAAAGAGGGGAAAATGC # Right flank : TATTGCCTTCTTTTTGGATAAGCTCGGCAAAGTCTGCCAAAAATTTGGGTGAATTCATAAGTTGGGGGGCGAGTAATAAAGCTTGTTGAAAATATTCTATAGCCTTTGGATATTGCCCTGCTTTTTTATAACATACCGCTACCTGACAAACAATTTGGGGAACTTGAAGGTAAGAAGGTTCTGCATCCAATGCCTTTTCTAAGTAAACGACTGCCTGACTATAATAACCAATATCCATCAGTTGTCGGGCAATAAGTAAATAAGGGTGAAGTTTGGCACTGGGACGATTAAGCCTAGCTCCAGGAACAACAGTAATGACAGCAGGAATGTCCAAGTCAGGATGGGTGGTTTCTATCACAAATCCTTCTAAGTGTTTTTGACTCAACAAATCAAGAACACGTTCTATTTCTATCTTAAAATCAGGGTGGGAAAAAGAAGGAACACTAGTAAAATCTATTTTTTCACCATCTAAAAGAAATTTAGCTGATGTTAAGTCTTTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //