Array 1 37561-36741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065662.1 Aerococcus urinae strain FDAARGOS_911 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37560 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 37499 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 37438 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 37377 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 37316 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 37255 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 37194 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 37133 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 37071 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 37010 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 36949 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 36888 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 36827 28 93.1 32 ......................A-..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 36767 27 86.2 0 ....................--....TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : GTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58675-56511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065662.1 Aerococcus urinae strain FDAARGOS_911 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58674 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 58613 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 58551 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 58490 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 58429 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 58368 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 58307 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 58246 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 58185 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 58124 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 58063 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 58002 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 57941 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 57880 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 57819 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 57758 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 57697 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 57636 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 57575 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 57514 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 57453 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 57392 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 57330 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 57269 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 57208 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 57147 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 57086 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 57025 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 56964 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 56903 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 56843 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 56782 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 56721 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 56660 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 56600 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 56539 28 75.9 0 ........-..C......A.T..T...TG | A [56514] ========== ====== ====== ====== ============================= ================================= ================== 36 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTGA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //