Array 1 1118430-1118042 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134493.1 Serratia rubidaea strain NCTC10036 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1118429 28 100.0 32 ............................ TGTTTCAAAGCTGCGTAATCCGCTTGAGATGT 1118369 28 100.0 32 ............................ ACCACCGGCTCCACCGGTTGCGTGAACGAGGT 1118309 28 100.0 32 ............................ AGCGGCTTTTATCGGTGTCCAACGTGCCAAAG 1118249 28 100.0 32 ............................ TGCGCCGTATACCATCCACGCCACCGGCTGCG 1118189 28 100.0 32 ............................ AGCGCGCAGTGATGGTGAGATCAAACTCACCG 1118129 28 100.0 32 ............................ AACCCGGCGGGGCGGCACGGGGGCCGAGACGG 1118069 28 71.4 0 ........T........T...AA.ACCC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 95.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGAGCTGACGTCCGCATGGCTGTCCGGACTGACGATCACGCTCGGCAACCCCAAAACCATTGCCTTTTACCTGGCTATTCTGCCGCTGGTCATCTCGTTGGATCATGTCTCCCTGCAGGTGTGGGGAACGATGCTGGTGCCGCTGACCATGTTTGTCCTCTTGCTTGTCGGCGCCATATTTATTCTGGCGGCATTAAAAATACGCCGTTTCCTCACCAGCGCATCTTCCCAGCGCATACTCTTTCGCACCACGGGCGTTATTATGGCGCTGGCGGCCGTTGGCATGGTGGTGAAATCTTTGTAGGGCGAGGGCAAATACCGTTGGCGTTTTATGGGGCTTTATGGCCTGAGCGTCATACCCAAGTCCTGACCCTTTTTTTATGAGCAACGTTAACTTATTGATTTTTAATAGTGTGTATCGTGTGTCTAACAAAAGGGTTTTGGACGAAATTATAGTGATTGTGCTGTTTAAACAAGCGATTAGCGATATACTGCAACA # Right flank : CACTCCGGCGGGGTTTGCTTTTCTACGTAAGTCACGACCGGTAGCAAATCTCAGAAATTATAAACAACTGACACCAGTATAGATTTTGAACTCTCCAACATGCTTACTGTCACTGTTTTTTGAGGATCGTCTCCAGTCCAGCATGTGGCCTCGATAAAGCATTCTTTCTGCTTTTTGTACCCTGCAGTTTCCAAGTAAGCATCGACTTTACTCGAATCATCTGCATCGTAATATCTGATCGCATATACATGTGATGAAGGGCCGGTAATGTTTGCAAAATCAAAGTCATAACGAAGGGATATACGCGGCATAGCCTTCAGGAGGTCAGGAGTATAAAACTCATACTCTCTCTTATCCTGCTCGGTATAGTGTGCGCTGCCGGCAAAATTCATCGCTATATAAGGCCATGCCCACACGAATGCAGCAACAATCACCACTCCCGCCACTATGATCGCTTTAACTGATTTACGCATAGGGCAATACCCCGTTCCTCGCACTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1127102-1126654 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134493.1 Serratia rubidaea strain NCTC10036 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1127101 28 100.0 32 ............................ TCTTCTGTGCCGTTGATGTCATCACCGCGCAC 1127041 28 100.0 32 ............................ TCCCGCGCGGCCAGCAGTTCGCGAGCCTCTGC 1126981 28 100.0 32 ............................ ATTTCAGCGGCGCGCGGTTCATGCTTCACCGC 1126921 28 100.0 32 ............................ GGACGCTGCCCGGCGGAGCTTCAGGAAGCCGG 1126861 28 100.0 32 ............................ ATTTGTTAATTTGCGCCGGGGCGACACACCAG 1126801 28 100.0 32 ............................ GTCGGCAACTGGGAATACAACTGGGTTGGGCT 1126741 28 96.4 32 ...........C................ AGCGAGGCGTTGATGCGTTTACCGAAGTTGTT 1126681 28 67.9 0 ..C......T.C...AA.G.T.G.T... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGTTGACCGAGCTGGAGCAGCACGGCTGGCGTAAGGGCCTGCGTGACTACACCGAAAGCAGCGCAATATTGCCGGTGCCGGCAGATGTGGCATATCGTACGGTGCGGCGCGTGCAGGTGAAAAGCAGCGCCGAGCGACTGCAGCGCCGTTCGGTTGCCAAAGGCTGGCTGACGATGGAGCGGGCGCAGGAGCGTATTTCAGCGGTGAAAGAGCAGCGCAGCACGCTGCCGTTTATCCGCCTGAAAAGCCTTTCCAACGGCCAGTCGTTTTTACTGTTTATCGAGCAGGGCACTCTGCGCACCACGCCGACCGCCGGTGGGTTCAGCGCCTACGGCCTGAGTGCGACTGCCACCATCCCCTGGTTCTGACCCTTTTTTTGCACGCAATCCTAACCTGTTGATTTTGCAGGTTAGGATTGAAGCGTCTGAAAAAAGGGTTTTTGGTGGAATAACGAGGGTTTGACTGTTAAAACAGTCGATTAGCGGTAAACTGCAACA # Right flank : TGCAGGCGTCTTCGATTTTTAAGACTCTGCGGCTTTTAATAAATGTTCGTAATTTGTACTATTACACTCTTATTTCTAGGTCAAAGGATAGGCCAAATGAGTAAAAGATAGGATTTGATAGATATTAAAGATGTATCGACCGCTCAATATGGTCTTGTCTATTCTGAAATTCTTGGTTGGCTTGATCTTGGTCATGCTGCGGGTACGGACATCCGTAAGGTTATCGAACAAATGGATGTTGGTGAGAGGAAACCAGAACCCTACTATGAAGTCATGTATTTTCAGTCAATGTATAAATTTGGCCATAGTTTAGGTATTGGGGTGCACACGCGCTGGCGTATAAAAAAGGGCTGTGATCAAGCCTCAAGACATAGTATTGTCCTTGCCATGATGATGCGTACCGCATTACGCTTTGAAAATCTTCAGGCATCAGTCCCGTTCAGTTGGGTAACCGACAGCGGTTTTAGCGCTGAAGACTTGGTATCGGATCTTCTCGGTTT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3802963-3803170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134493.1 Serratia rubidaea strain NCTC10036 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3802963 28 96.4 32 ................A........... ATCGCTTGAGCCATTCGAACCGCCGAACCCCT 3803023 28 100.0 32 ............................ ATATCCAGCGCTTCAGCGTGCGCCGCTTGAAT 3803083 28 100.0 32 ............................ ACAAGACTGACGACGCCGACTCAGGACAGCCG 3803143 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTTTGGCGGTGATGGTTTGCCAGCGCGGCGGCGGCGGCAGGATTGCAGGGTCGCGATGGCTGAGTTTTAGGCCGACTCTGCACAGCATGGCAATCAGTACGCTAAACCCTGCGGTATAGTGGATAACTGCCATATTCGCTCGGGCGCTGCTGCCGCGCGGAGCCAGACCTTTTAATTCCATCGCCGCATAGGCGACGACGACTAAAACCAGCACCAGCCAATGAAACACAATCTGACTGGGGGAGAATTTTTTATCCATTTTTGCATCCTCGCTGAATATCCATGGAGTTATAGCGTGTGAAGCTTAACCAGACATTAAGAGTGTGATTTTTATTGCCGTTGGCTTCTTGCCGATCTGTGGGAGTGGAGACCCTTTTTTTTACGCCATGGCTAACCTGTTGATATATCGTGGGGGAATTGGGCGAGGAAAAAAAAGCCTTTTTATGCGTAAACATCCATAGTGCTTTTAAAAACAATAAGCTAGTGCTAATCTGCAACA # Right flank : AGCGCAGCTCCTAGCGCTGTCATTGATCTTCTGCGCGGAACGGGTTCAGTAAACGGCAGAGCCGATCGTTCGGCTTCCTTCTGAATCAGTATTCAAACCCAGCGAACAGCCGCAACTTGCCGGCGGCACTTGGCGCCCCACGCTCTGGCTCTGGAAATAGCGCTATCAATATGTGCTGGGCAGATCACAACACTGAACCAGTGGAGAATGGACATGTTTCATGATAGAAAGGAATTTCAACAAGGAGAGTCAGAATGTCAAACACCGTAACTAATAAATTACTTGAAACGTATATCTTTCGCAGTGATAAACCCTCTCGTGTGAAATACGAGATCTATGGAAATGATGTTGAATTAACAGCAGCGATAACCATTTATCGTGAGGAGCCATTTGGTATTCATACTTACAGTGCGATTACTTTAAATGCATCCAAAGATCATCCAGAATATGCGTTTGAAGAAGTCAGAAAACATTTCGAAAAAACTTACGCTTAAGTAATT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4578766-4578258 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134493.1 Serratia rubidaea strain NCTC10036 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4578765 28 100.0 32 ............................ GCTAAACGGGAATAACTTTGGCAAGTTCCAGA 4578705 28 100.0 32 ............................ TCAGCCATTTAAGGCAGGAAGATGTTGGAGGG 4578645 28 100.0 32 ............................ TATCACCCCCCCTACAAGCGAGTCTCGCCCAA 4578585 28 100.0 32 ............................ GGCAACAAGTATCACCCATCTGTTTACGCAGT 4578525 28 100.0 32 ............................ CAGCTTGTCAACTAGGCGCGCCTGAAACCAGA 4578465 28 100.0 32 ............................ ATGTCGATATGGCATTCAACCGCCTGGTAATC 4578405 28 100.0 32 ............................ TGAAGGAAACCATTGCAGCCAACGTTGAATTT 4578345 28 100.0 32 ............................ AGAAAACCGGGCGTTCACATTGCCAGTAGCGG 4578285 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCGGGAAGGTTTGCTGCACTTCGGTGCGCACCACTTTATCTGCGCCACCGCAGACCGCTGCGGCATCAATGGTTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGCGTGGTGGTCTGCTTAGGCGCTGCGACCGTTTGGTTTTTCATCGTGAACGTCTGCTGTGCACAGCCGGTAACCGTCATGGCGAGTACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATTAATCAATATAAAGCGCGGGGATAATGCCACGCTTACAGAAATTTACAAGTGTGGGTAGCAATAAATAGCGTGCTAAGCGAGGGGGTTTGCGCGGCAGAGAGCGGCAACGTAGGGCTGCGCCAGCAACCCTTTTTTTAGCACTATGCGTAACCTATTGATATTTAATGGGCGTCTGAGCAGGCGTAAAAAAAGGGTATCAGCGGCTGAAAAGGGGAAAAAGCTTTAATTATTAAACCGCTGGCCTTAAACTCTAACA # Right flank : CTCCTGCAGCTCTGCATAAACAACGGGAACCCCAGGGTTCCCGTTGTCGATTAACCATCATTGCCGCAGAGGCGTCAGCGCCCGCTCACGGCGGCCGGGCTGTCCGCCGTGGCCAGCGCATCCTCCAATACCTCAAACAGGCGGTCGATCTCCTGGCGGGTGTTGTAATGCATCATGCCGATGCGCAGCACGCCGCCGCGCTCCTGCAGGTTGAGCTGCCGTATCAGACCCTGCGCGTAAAAATGCCCGCTGCCGGCGCAGATATTGTGCTGACCTAACAGCATGGCGATCTGCTCCGGCGAGAAGTCGGTAAAGGTTAAGGCAAAGGTCGGCGTGCGGCGCGTGCTGTCCGCTTCGGGGTGGCCGTACAGCCGGACGCCGTCCAACTGCCGCAGGCGCTGCAGAAAATAGCGACACAGATCTTCCTCATGCCGGTGGTAGGCGGCGAAACTCTCCTCCAGGCGCTGCCTGAGCGGCGCGTTCGGCGTGCCCCACTGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //