Array 1 108107-107040 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGD01000025.1 Salmonella enterica subsp. enterica serovar Livingstone strain CVM N45399 N45399_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108106 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 108045 29 100.0 32 ............................. AGCTACAGGAACGCCGCAAGGCTGAAGCGCCA 107984 29 100.0 32 ............................. GCTAAAAAATTAGGGGGGGGCGTTGATGGCTG 107923 29 100.0 32 ............................. CCATTAAACCGTGGGGCAAGCACCGTGCCGAT 107862 29 100.0 32 ............................. AAATGGGCGACCAGCGGCATTTTTATGTTCCG 107801 29 100.0 32 ............................. CGCAATTACACTGACAATTCATCAGCACAGAC 107740 29 100.0 32 ............................. AATTATTTGGATTCGTTATGAATTTTAACAAA 107679 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 107618 29 100.0 32 ............................. ATCGCATCAATAGCCTGCTCAAACGTTTGGGT 107557 29 100.0 32 ............................. ACGATTCAGGACGTGCTGATTTCTGGGCTGGT 107496 29 100.0 32 ............................. ATTGGAATTTGTTGTGAAAAACACGGGCGCAC 107435 29 100.0 32 ............................. TGGCTGAAACTAGTCAATCCACCTCAATCTGC 107374 29 100.0 32 ............................. GAGTCATAGTATGAGCAGGACTGATTATTTAA 107313 29 100.0 32 ............................. GAGATGAGGCCATATCTGTACAAAGGGAGTTA 107252 29 100.0 32 ............................. AATGCTCTTTCCGTTGTGTGTTCCGCATAACA 107191 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107130 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107069 29 93.1 0 A...........T................ | A [107042] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGTCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126467-124363 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGD01000025.1 Salmonella enterica subsp. enterica serovar Livingstone strain CVM N45399 N45399_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126466 29 100.0 32 ............................. CGCGAACAAATGCCCTTACCTGCTTAGTCTTG 126405 29 100.0 33 ............................. CCCGCCGCCGTGGGGAGATCTCATCCGGCGTGC 126343 29 100.0 32 ............................. CGGCAGAACTGCCACATGGAAACGGCAATAAC 126282 29 100.0 32 ............................. GCACTCCCGGTATCGCCGCAGATACAGGCGTT 126221 29 100.0 32 ............................. CGGTCAGATTGTCAGTATAGGGCAATCTGACA 126160 29 100.0 32 ............................. CGGCAACAGTAGCCACTCAGGGTGGATGGTAC 126099 29 100.0 32 ............................. TGCTACTGCTATCTGTAAAATAGCGCTTAAAT 126038 29 100.0 32 ............................. GGGCGGTAACAGAATGAGCAAACCCACAATAG 125977 29 100.0 32 ............................. GTGGTTTCATCCTGATTAATCATCGAGCGCTC 125916 29 100.0 32 ............................. TCCAGAAATAGATAAACGGTCATCGTGTGGAT 125855 29 100.0 32 ............................. GCGGCAAGAGCGTTAAATACTGGCCTCAATGA 125794 29 100.0 32 ............................. GGGGAATGGTCGGTAATTTTGACGGACGGTGA 125733 29 100.0 32 ............................. CCACTGTCGGTGTTGATCGCGCCGATATTGAG 125672 29 100.0 33 ............................. TGCTGGCCGCTCGACGGCCGGGCCACGGCGTGC 125610 29 100.0 32 ............................. TAAATCATACCGGTACGATAGAGTCATATGAG 125549 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 125488 29 100.0 32 ............................. TCGAACAGCGACTCCGACCAACCACTGCCGGA 125427 29 100.0 32 ............................. CGCACTCGGTTTACTCACCACACCCGCGATTG 125366 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 125305 29 100.0 32 ............................. AGTCGGCAGCGACACCTAAAGAGCATGAATTT 125244 29 100.0 32 ............................. AGAAACCGCTTCGTCTTTGCCCGACTCGCTTT 125183 29 100.0 32 ............................. TATCCCGGTAGGGATAAATTTCACAATCAGGA 125122 29 100.0 32 ............................. ACCTACGTCACGACAAGGAGATAGCCGACACC 125061 29 100.0 32 ............................. GTAACGACGGTTCCGGCGCTGGAAAAGGTGAA 125000 29 100.0 32 ............................. CTGTGCTTTCTTTTCGGCACGCTCGCACCGGT 124939 29 100.0 32 ............................. GGATCTAACGAGCTGTAAAAATTCCGTGTTTT 124878 29 96.6 32 ............................A TAAATTGCGGTTTTACGGTTCGCTGAATGTCG 124817 29 100.0 32 ............................. CACCCACATCCGATTTAGCTCCATATATCCCC 124756 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 124695 29 100.0 32 ............................. CATTAGACTCGTATGCGACCGCTATCGGGGGA 124634 29 100.0 32 ............................. AGCGGGAAAAAATCGAGAAATATATCGACGGC 124573 29 100.0 32 ............................. TCGCGCGTTAATGAGGCCTTGCGTACCTGGGG 124512 29 96.6 32 ............................T CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124451 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 124390 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTAACTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCGGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //