Array 1 554-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVS010000018.1 Corynebacterium diphtheriae bv. mitis strain 13-15 NODE_18_length_38862_cov_27.516097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 553 29 100.0 31 ............................. TGGCCTTGATCATCATTGATGTTGCAATAAC 493 29 86.2 32 CG...T......................G CTGTAGGAATAGCCGGCGGGCGCTGAATACAG 432 29 96.6 32 ............................G CGCATGACGTTGGGTGGGAAACTCCACTGCCA 371 29 100.0 32 ............................. CAATTCACTGAATGTGGTATGTCTACTGGGGC 310 29 96.6 32 ............................G GTCCCGAGGATGCCCCTGTGCGCCCCACCGTG 249 29 96.6 32 ............................T CTTTTGGGTTCTTTTTGAGTCTTTTGTCGTGG 188 29 100.0 32 ............................. CGCAGGCGAGGTCATAGAGGGTGAGCTGATCC 127 29 100.0 32 ............................. CTTTAACGACATTCTCGCCGCGGTGCGCTGGG 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CCCCTGCCAGAGATCCAACCATATTCTCCGCTAGTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVS010000064.1 Corynebacterium diphtheriae bv. mitis strain 13-15 NODE_103_length_226_cov_8.979798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 96.6 32 ............................G GTCCCGAGGATGCCCCTGTGCGCCCCACCGTG 100 29 100.0 32 ............................. CTTTAACGACATTCTCGCCGCGGTGCGCTGGG 161 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : GAGCCCCAATTCACTGAATGTGGTATGTCTACTGGGGCG # Right flank : CCCTGCCAGAGATCCAACCATATTCTCCGCTAGTTTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98956-97585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVS010000010.1 Corynebacterium diphtheriae bv. mitis strain 13-15 NODE_10_length_98955_cov_27.423635, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98955 29 100.0 32 ............................. CTTTAACGACATTCTCGCCGCGGTGCGCTGGG 98894 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 98833 29 96.6 32 ............................G GTGGATTTATCGGCGGTAGCATCGATCCCCAT 98772 29 100.0 32 ............................. AAGCAACTATCCGACCTGTGGGGGCTACAAGG 98711 29 96.6 32 ............................G TCTTCATATGGATCGGGGCGGTGTTCCTCTGG 98650 29 96.6 32 ............................T CACCGCCTTTTCTGGGTCGAAGCTGTAGGAAT 98589 29 100.0 32 ............................. CCCCTCATGTAGAAAAGGGATTCGTCGATTTT 98528 29 100.0 32 ............................. CTGCAAGAAAACAGAGAAGGCGTTCATCTCCA 98467 29 96.6 32 ............................G TCCACCTCTTGCACCAGCGCCTCCCTGACGAT 98406 29 96.6 32 ............................G TCCAGGGCTTGAGTGCGTGCGTCTTTCATCGC 98345 29 100.0 32 ............................. ATTGAGTGGGAAGAAGCCCCAGCAAACTTTGA 98284 29 100.0 32 ............................. ATTTTTTACCCCTCATGAAAGGATCAGGTCTG 98223 29 96.6 32 ............................G AGTTCCTATCTGTGTAAATTGAGTTACATAAC 98162 29 96.6 32 ............................G ACAAGTCGGCGCGCTGGAAAACGTCGTTGGAG 98101 29 96.6 32 .........A................... CGCCCACCCACGCAACATGGGGAGCGGCCATA 98040 29 100.0 32 ............................. GCCGCAGTAATTACCGCACAAATCGCCGACAC 97979 29 100.0 32 ............................. TGTCCAAGATTAGGCTCCGCGGGGATCATGGA 97918 29 96.6 32 ............................G CACCAGTAGGAAGTATTGTGTGCAAGCGGACA 97857 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 97795 29 100.0 32 ............................. ATCATCACGATTATGCGGCTGAAGCAGCTAAC 97734 29 93.1 31 .......T....................G TTCGGGATAGTGACATCGCCGACAACATGCG 97674 29 89.7 32 CG...T....................... AGACCACTGACAGCCGGCAGATCAACCCCTGC 97613 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.8 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : | # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //