Array 1 836-88 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFS01000298.1 Calothrix elsteri CCALA 953 scaffold298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 835 35 100.0 37 ................................... TCTGAATTTCCATTTTTAATCTCAGCAGCCACCGCAC 763 35 100.0 38 ................................... AGCGATTGCAGATAGGTCAAGAGCGAATACACGTTCTT 690 35 100.0 35 ................................... TGATTTTGTTCTTGCGTAATTCTTTCTTGTAACAT 620 35 100.0 36 ................................... AATAGAAGCTGATGGTTTTGAACAATTTGAGCAATA 549 35 100.0 36 ................................... AATATTCTCCACCATCTGCACGTACAACTGAAACTG 478 35 100.0 37 ................................... TTTTCACTTAGTCTCCTTATGATAGCACTATTGTCTT 406 35 100.0 37 ................................... TAACTCCTTCGCTCTTCATCTGAGCAGCACGAACAGT 334 35 100.0 34 ................................... GCTTTCTGCCCCAATACCATGAGGACTAACACTT 265 35 100.0 38 ................................... AAAGAAAGTCCGGGTGCAGTCACACAAAGTATACTGCA 192 35 100.0 35 ................................... CACATCTATTGAAGTTATTGCATCAAAAATGTCTA 122 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 11 35 100.0 36 CTTTAGGCTTCTTTTGAAGTCGAATTAATGGAAAC # Left flank : TGGAAGAGTGGAGAGCGCAATTAGTTGATTCTTTAGTCGCTTATTTGGTAAATTCTCAGATTTTCACAATTGATGATTTTACCCTACCTGACGAACGTGGAGGAGTATATTTCCAAACTCACGCACTGAAAAAGTTTCTCAAGCATTGGGAGGAAAAATTGCAATCTGAGCTAACCCATCCTCATACTGAACAAAAGGTAGCCTACCGTCGTGCTATTGAACTACAGGTTAGAGAATATTTAGCTTGTTTGATGGGTGAGGTGAAGGTGTATCGTCCGGTAATTTGGAAAATGTAACGAAATGTAAATTTGCGGGGGGTAGGTAATGTCTAGAACTCCTATTCTATCGTTGACCCCCGCAAATTGCTTTCTGGGCAAGGGTTTGAAGCGGTTACAAGTGTAGATTCTTGATAAGAAATATCAATTATTTGAGAAAAATCTTGACCCCCGCAAAAGTAGGGGTGTAAGATGCTCTCAGGGTAAGGGTTTTATTAACCTAGC # Right flank : CATAGATTAATAACCCTGATTTTTTAATGTCGGGGTTATTTTCGTTTACCAGATATTTATGTTTGAAAAATATAGTAAATATGAGAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGGCTTCTTTTGAAGTCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1032-1354 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFS01000301.1 Calothrix elsteri CCALA 953 scaffold301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1032 36 100.0 37 .................................... CATCTAGCAATAACTGCACAGCATCTTGAAATTCATC 1105 36 100.0 33 .................................... GAGCGGTAACACAACGCTCGAAAACCTCTTTGA 1174 36 100.0 37 .................................... TCAATCTCGATCCTGCTCAGCAAGACCGAACCAACGA 1247 36 100.0 35 .................................... CCATTCTTCATGTTGTTCTGATAAGCCCAGCAGTG 1318 36 77.8 0 ..........C.CAC...........A...CA...A | C [1351] ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 95.6 36 CCCCACCGATTGGGTTAAATCGGCATTATTGGAAAC # Left flank : AAAAATCAATCTTCCCAAGTCTGTATTTTCTTTGCAAGCAACAGGAGATAAGCAATTTCCCAACCAATTTCAGGCTATATTACCCAAATGGTCTTTATCTGACTTCGATTTGTGGCGCTGGATTGTTGGTTTTGGGGGTAATGTCAAGGTGATACAACCAATCGAATTAGTAGATAAAGTCAAAGGAATTGGTAGTGAGATTGTTGGTGTTTATCGGGAAATTCCCAATTAAAGTGGGAATAGTTGGGTTTCTAATTGTGCTGAAAGTGCTTCTGTATAAGCTTTTGCTGAATTCAAAGGAGATTTTGTATCATGGTTTTCTACACACCTCGCCAAATCGCTGAAACCTCTATTCTTTCGTCGAGGTGTGTCGATTGCTTACTGTGTAAGGGTTTGAGCTATGTGTTTTACTAATTTTTTGCCTGGATGTACAATGTTTTTTAGAAGTGCGTCGATTTGCGGTCTGAAATCCTTACTGGGCAAGGGCTGCTAGACGAACT # Right flank : AAGCGATCGCACCAGAGAAAATTACTCTTGCGATCGCTTTTTATTGCCCTGTTTTTTTCTGTTATTTATGCAACCAAAAATATAAAAAAATCAGTATTTCTTTTGATAAAAGTCGGGTTTTTATTTTTATTCTGAGTATAGAATAACTCTTTTATTTGCGTAAGTAAGTAGGCGGAAATAAACGGAACTATGTAACAGAATGTAAATTCATCTCAAAGCCTTATCCCTACTCACTACTCACTATTCACTACTCCCTGACCATAACGATAATTTTTCCCGCTCACCTACTTAAATGAGGCTGATAGAATGTGATAGTTGTGGTGCTACGCAATGACTGTTTAATTTTTTTATAGTCGCGAAATAAAAGCTGGAATGCTCCCCAGAGAGCGATCGCTAAATAATTTAAACAGGCTATTTACAAATAGGTGCATATCTGAAAGTATTCTTAGGTCATCAATATTATGTTAATCATAATTCCTATTTACTGAAGATTTCCCCAT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAAATCGGCATTATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 5026-3333 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFS01000338.1 Calothrix elsteri CCALA 953 scaffold338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5025 37 100.0 35 ..................................... CCATTAACCGCTTCTGTATTGGATTCATCAAGCTT 4953 37 100.0 35 ..................................... GAATTTAAGGGCACGCAGCGGATTGTACGGGTGCG 4881 37 100.0 36 ..................................... TATTTACGAAGATGACGCGGGGGAACAAAGCGCCAT 4808 37 100.0 34 ..................................... TCAATCAATATTCTGTGCCCAGTAAAAGCCCCTT 4737 37 100.0 35 ..................................... GCGTCCCCATCATCTTCCCCGGTATCATTTCCGAA 4665 37 100.0 34 ..................................... GAGTTTAGCGGCACGCAGCGGATTGTACGGCTGC 4594 37 100.0 36 ..................................... CCAAACTTCACGAGTATTTAATTGAAGCATTGGAAG 4521 37 100.0 33 ..................................... AAGGTTACCGCAGTGGTTAGAGGGTCAGCAATG 4451 37 100.0 37 ..................................... CATTTGAATAACAAAAGCCCCTTCCTGGTTATCCTGG 4377 37 100.0 35 ..................................... CCCGAATGGAAGGGTTCGCCGTTCGCCGTTTGCCC 4305 37 100.0 35 ..................................... GATTGAAACTTTAAGGCAGTGTATGGGGGTAAAAA 4233 37 100.0 33 ..................................... TTAACGTTGAAGGGGACTGCTCTAGATAAATGT 4163 37 100.0 37 ..................................... CGGGTTGAGTTAGCGTAAAAAACCTCGCGCGGCTTGA 4089 37 100.0 36 ..................................... ACATCCCCATCATCTTCCCCGGTATCATTTCCGAAT 4016 37 100.0 33 ..................................... CTCGTAAATAAACCACTTAATTGAGCCTGCCAT 3946 37 100.0 34 ..................................... TGCGGAAGATGAGGGGGAAGGTGGTAATGGTAAA 3875 37 100.0 37 ..................................... CTAAGTTACATGAAAACTTAAGCGAAGCATTGGAAGT 3801 37 100.0 38 ..................................... CCAAAAAGTGTCAAGTACTGGGTGTGACACTTCTTTAA 3726 37 100.0 34 ..................................... CTGATCCAAATATCAGTAGGTATTATGTTTACTT 3655 37 100.0 36 ..................................... CTATACGATTTTGATATGAACTTTGACTCGCAGATG 3582 37 100.0 34 ..................................... ACCATATCAAGCGTGAAAGTGGCTCCCTCATCGA 3511 37 100.0 34 ..................................... TTGCATCACCTGCTTACAACGGTTGCAAAGAAAA 3440 37 100.0 34 ..................................... TGACTATCCTGGTTGCTGCACGTGGGTTAATCCC 3369 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 100.0 35 ATTGCAATTAAAACTAATCCCTATCAGGGATTGAAAC # Left flank : TTAGTGGATAGCGAGCGCGGAGCAGTAGTTTAAATTCGTCTCTAAATGTCATTCGGTTAATGGTTAGTGGTTATGGGTTAATCGTTTAATTGACTGAAGAAACCGGGTTTCTCCCCCCTCCAAAAGCTCAAAATTGATTTTATAACTGATTTTTTGGGATTTCCTTTCCTTATTTTTAAGGTTTACAGGATTTATCACAACATGGGGATATCGTAATTTTTGTCAAGTAGTTGCGATAAAAAATAGTTTTTTGCGCTAACCTGTGGGTGTTTTTTTTGAGTAGTCGTTTTTTTCGCCTGAAATGCCTGTACTGTATGGGTTTGAATGGGTTTTGATGCTGTAGGAGGTTAGCGCAATCGCTGAAGCCTTTATCCTGACTAGGTTTAAGGGATTGTTGGAAGTGACCTCTTGACAATTCGATACCTGAAAAGCTACTTTTATTTTAGGTCGGCGCAACTGCACCTTGAAAACCAAATACAACAAGGCTTCTACAGCGAGCT # Right flank : GCAAAAAAAGTGCGATCGCATGATGTCGTTGAGAATATGAGGTTATTTAGAGCGATCGCGTGGGTTCAAGATTCCCGACTTCTGTGTAAAAGCTTTAAATCTGACAACAAGTATAGTTAGAAGTTGGGAATCTGTGCAGGTTTGAGTTTTTGCGTCGGGGAGGGAATCTTTGTAACGCAGTGACTCCCCAGCCTATGAATATTAATTACAAATATTAATTAATTATTTCTTGTAATCCCTTAACTAATCTTTCAATTCCAGATTTCGCTGTATCTTGTTGCAAAGCTCCATATGCAACTCGCAAATAACATCCTTCCTCCATTCCAAAAGTATTACCGGGAATCACAGCAACTTGATATTCCTTAATTAATCTTTCTACCAAACTAAAAGCATCAATATCTGTGTTGACTTTTAAAAAGAAATAAAACGCACCATCCGCATTCGCTATTTGACAAATGCCTGTTAAATCTTCGAGCGATCGCATCACCAATTTGCGAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAAAACTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 1559-1812 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFS01000407.1 Calothrix elsteri CCALA 953 scaffold407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1559 37 100.0 35 ..................................... CTGCCATTTTTATTTATTGCTAGTTGCGAACATTG 1631 37 100.0 35 ..................................... GTTCTCTCCCCAGCAAATATGAAATTTTACTCATC 1703 37 100.0 36 ..................................... TAAAGGCGAAACAGCACCTTGTCCTGTGACTTTTAG 1776 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 GTTTCAACACCCCTCCCGGAGTGAGATGGGTTGAAAG # Left flank : AATTAGCAATAAACGCCTATCAATCTCGAAAAGCCTGATTGACAAAACACCGAACCATGAAAATATAATAGGAATTAACAACAGCGCCGCAGTTCATGTTTGTTATAAACCTCTGTACTGCGATAAATGCGGGTTAGTTTGACTGTTGTGAGACAGTCTTGCTTTCTGACCCTAGTAGCTGCCCACCTTGATGCTGCTGTTCCTAGTGAACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAATCCACCTTAATTATTTATTTTTGGCAAACCAAAGCGAGGTCAATTTACCTGGGGTTCTGCCAAAAGTCCACATCCCTTGTCTAATCTGTGTTTCCGATGTTTGGATGCTTCGATAATGTTTCCTTGAGAGGAAAAATTAGAGCAGATTTACGACATCCGGCAAAATTGCTTTTGGAAGTGTCTCTACATAAGGGTTTGGTCGGGCGGA # Right flank : CACATTGTATTCAAAAAATATTTGAAAATCTTCAGGTGGGTTGAAAGATCGGAAGGTCGTCGGTTTAATTCTGACAAAGCCTATAATAGTAAACAAACTATTGACATTGAGAGACAATAGTTTGGCAACGCGGACAAATAATTTGGCAAGTGACAGCTACTGAAAATGCCACATGCAAATAGCAGTGACATTTAATTTGTTAACGGTGACACTAATTAGTTAAAAATGACATTAATCTGTTAACAGTGACAAATAATTAGTTAATGTACAAAAGATTCTACAATAAGTCATTAAAAGCCGGCAGTAGGATTTGAACCAACGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCCGGCAAAAACGAGGTTTTTGAGAGCTTTATTAAACAAATAGCTTATTTAGCTCACCAGTTAAGAATTATATCATAGCTGAGTCAAATGTAAACCGCAAATCTAAAAAAAATCTGAGTATTCAGGAGACACCCAATAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCGGAGTGAGATGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 4480-4076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFS01000437.1 Calothrix elsteri CCALA 953 scaffold437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 4479 36 100.0 42 .................................... ACCGTATCGTACTCTCTTTCCTGTTTAATTGTAGGAGTAGCT 4401 36 100.0 33 .................................... TACTATTAACCGTCCCAGACTGGGTTGAAAAGG 4332 36 100.0 40 .................................... TTGTTGATAAGTTTATATATTTTTGACGGGATACCTCTAA 4256 36 100.0 36 .................................... TTTCTACTACGAAAGTTACGTAAACTTTTCCTTTCA 4184 36 100.0 37 .................................... CTTTTTGATCAAGGAACACTGGTGGGCAATCATTAAC 4111 36 88.9 0 ..............................A.T.TT | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 98.1 38 GTCTCCTTTTATGAGGGGAAATAATTGATTGGAAAC # Left flank : TCGGAGAGTGATTTAGAGAGAGGTTAATTGCTAAAATGCTGTTATATATTGTGGCGTATGATATTCCTTGTAATAAACGGCGCAAGAAAATATCCGATTTACTTGAAGGGTATGGGCAACGGGTACAGTATTCTGTTTTTGAGTGTCAGCTAACCCATGCCAAGTTCAAGGAACTATGTAAGCGACTGCGGAAGGTTGTAAAATTAGAGGAAGATAGTTTGCGGTTTTATCCGTTGTCGCAGCATACTTTAGGGCAAGTTGAAGTTTGGGGTGTTAGTCCTCCGATAACTTCGTTTCCTAGTTCGGTGATTATCTAAGTAGTGCGATGGGGTCAAAAAATAGCTGAAAGGATGATTGTTGTGTTGACCCCCTCGCTTGTTTGCTATGTAAGGGTTTGGAGGTTTTGTTTGATCGGTTTTAGGTGTTTTGATAGGAGAATTTTAGACCCCCTCGCAAACTGCCTCTGGACAGGTTGCTGGGTATGGGTTTAAAATTAGTGG # Right flank : AATTGATCGTAAATGAAGCGCTTAAAAACTCAGTATCTTCGGATGCTGGGTTTGTGCGAACTGACAAGTCAGCGCAAGCTATCGCAGTGGCTTTACATAACTACTTCCCAGATCGAAAATTAGACTTTGGTTGAATCGTGCGATCGCGTTTTTGATTTGATTGGGAGTGCGATCGTATTTTTGATTGAACTGGGAGTGCGATCGCGTTTTTGATTTGATTGGGAGTGCGATCGCGTTTTTGATTGAACTGGGAATGCGATCGCATTTTTGATTGAACTGGGAATGCGATCGCGTTTTTGATTGAACTGGGAATGCGATCGCGTTTTTGATTTGATTGGGAGTGCGATCGCGTTTTTGATTGAACTGGGAGTGCGATCGCGTTTTTGATTTGATTGGGAGTGCGATCGTATTTTTGATTTGGGAGTGCGATCGCGTTTTTGATTTGGGAGTGCGATCGTATTTTTGATTTGGGAGTGCGATCGTATTTTTGATTTGGGAGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTTTATGAGGGGAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2360-2904 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFS01000517.1 Calothrix elsteri CCALA 953 scaffold517, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2360 37 100.0 33 ..................................... ATCTTGAAAGTACAAAACTACCTGTGGTTTGTG 2430 37 97.3 34 C.................................... AGAAGCAAGCGATCGCTCATCAACAGGAATTCAA 2501 37 97.3 42 C.................................... ACCCTGCAACAACCCAGTAACCAACATCAACCTGAGGTTAGA 2580 37 100.0 32 ..................................... AAGGTCATTTGGGGGACAGACAAGACTCGAAG 2649 37 100.0 36 ..................................... CGTGTGAATGCAATAAAAACGTTACCACTCGAATCG 2722 37 100.0 34 ..................................... CCTATTTGCTGGTGGTGGTGGGATTGAGGTGGGG 2793 37 100.0 38 ..................................... CATCGAATCCAAATTTCAAAATAGCCGAATCTCTTGGA 2868 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 99.3 36 AGTCTCAACGCTTCTTTTGAAGTGGAATTAATGGAAA # Left flank : TAGAGTAGATCGCAATTAAACGCTTAACTAGTTCTCCAATACTAATTTTTTCATTCTTCGCAACCAATGTCCCCTCTGGTTCTGCATCCAGGGGAAGATTTTCTAAAAAACAGCCCAAACGACGATAAAATCTTTCAATAGCAGCCTTTTCATCTCTCCAAACCCGATTATTGGGGTTTCGAGTTTCTGCACCTAAATCGGGAAACGCGATCGCATCTGCACCTGTCATACTGGAACTCTCACCAATCCAATTCAAAGCAGTCCAGCTACGGGATAGTTTGCGTCTCTCCAAGTCATCCATTGCTAATTCAATGCTGTCAGCACTACCCCAAAATATTTCCCAAGCATGGTTGCCCAAATTCTGCCATTCTCTTTCCCAATGGTAATTATCGGGCAATTTTAGCTCAATCCAAGTTCGACATTCGTAGAGTAACTCTTTCCATGCAGATAGCAATGCATTTTGTACCTTATTTTCGCAAAGTAAGCCTGGTGTGACTAAA # Right flank : ACGGATATACCCAGAAATAACCAGAAAAAATCATGCGATTCTAAATTTATCATTCGCACCAAAAAACTCGACACCATCATTCATTACACATAAGATAAAAACATCAATATAAAAGACAACTTAAAACTTATCCCCTTAATAAACCCCAATGTCTGTGTCAAATATTTGTCACTTCCTTATTGGTGTTCCCGGTAGCGGAAAATCAACCTTTGCAGATGCATTAGAAAAACTCGGCAACTATGTCATTGTTTCCACCGATGAAATTCGCTCTCGGTTGTATGGAGATGCAGCAATTCAAGGAAATTGGCACGAAATCGAAAACCAAGCACTTCTTTTAATTCGACAAGCGCAAATATTAGGTAAAGGTGTCATCTACGATGCAACCAACTTTAAACGCGCTTTTCGTATGGATTTTTTAATCAAACTAGAGGATGGGAAAACATCACCGCATTGGATTGCATGGCATTTCAAAACACCCATCGAAACCTGTATAGAGTGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTCAACGCTTCTTTTGAAGTGGAATTAATGGAAA # Alternate repeat : CGTCTCAACGCTTCTTTTGAAGTGGAATTAATGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 13854-13377 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFS01000156.1 Calothrix elsteri CCALA 953 scaffold156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 13853 37 100.0 33 ..................................... GACTGCTTACGAGGCTGAGTTTAGCCGTGCTGG 13783 37 100.0 37 ..................................... TCAAATTAAAAACCCAGACAGCAAAAGCCCTGCTTAT 13709 37 100.0 35 ..................................... GAGCGATCGCGGCTTCCATTATTCGATCTCCTGAG 13637 37 100.0 42 ..................................... CTATATTCCACCAATCCAATAACTCAAACTTGCCATACAAAA 13558 37 100.0 35 ..................................... GAGTTTTAAATGCTTCATTAAAAATATCACTGACT 13486 37 100.0 36 ..................................... TTCGGACTTGCTGGTACGTATGCCCAGGCTATATCG 13413 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 99.6 36 ATTGCAATTACAAATAATCCCTATTAGGGATTGAAAC # Left flank : GCGATCGCAGTTTCTTTGCTTCCTATTTTTTGATTATCATTTTTTTTAATAGGGCAATTTATTTCTTGGTAGTCCCTTAGGTTAGCGTAACTGCACCTTGAAAATTAAATATAGTAAAGCTTCTACAGCGAGC # Right flank : CAGATTAATGACGCAGTACGATCGCACTCACAGAAAGCTCACTAAAAAGCATGTGGCTAAATTTCCGATAAACAAGTAGAAACACTCAGGGCATTTCTTCCGCAAAATCATGATATTACCTATAGGGGAAGCACGAAACCGCCAGCTAGATTAAAACTGAAAGCAGCGAAATTATATTGCCACCAATAAAATAAAACAGATAAAATCCAGACTATTGCGATCGCAAATCACATGAAAGATGGGAACAGGAATAACTTAACTTACGGAATATAGGCTGTATATTAGGCAAGTCGAGACTTCTAATTTACACTTGAATAACTATGGAGCGTCATATTTTCAACGAGCAGGGGTTAACGGAGGAAGAAGCTAAAAAGCGACGTGCAGAGGGTTTGGGCAATAATGTCTGTCTGCAAACGAGTCGCTCTTATGGTCAAATTCTCAACGAAAATATATTTAATTTTATTAATATTGTTTTCTTTGTGATTAGCGCTGTCATGATT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //