Array 1 4110491-4110702 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053258.1 Escherichia coli strain GF4-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4110491 29 100.0 32 ............................. GCGATTATAGCGGACTTTCAAGAGAACAGTCT 4110552 29 100.0 32 ............................. TGGAAAATCACCGACAATATTCGACATGGAGA 4110613 29 96.6 32 ..................A.......... TTATCGGTCATCAACTATAGCGCGTATTTACT 4110674 29 72.4 0 A.........TT...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGTGTTATAAATGGGTGGAACCTGTAAAGAATTCCACTCATTTATATTGTTTGTCGCCTCTGAAAACCCCTCTTTTTTGCCCATCCTTGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGAATAGAGTTATTTTAAATATTTATCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGTTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAATGTTAAAGGTTCTAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATCTCTCCTGAATGGCGTGAGTCAAAATATTGCATTTTTATCAAATGTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAGTATGAAATATATGAGCTGGTGAGTTATAAAGATTATCTATACTCAACAGACCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAACAAATTAGAACAAAATACAGGCAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAAGAAATATTGTCTTGATGGTGGGGAAACGTAATTTTTTATATTTTAAATATTAGATTAAAACAATAAATTAATATCATACTTTTATTTTATTCTCGAAAATGCCTAATTTCATTAAATACGTTGTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGTCTCCCTCGATT # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4118360-4120586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053258.1 Escherichia coli strain GF4-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4118360 29 100.0 32 ............................. ATGAATATTTGCGAATATTCGGCAGAAAGCGG 4118421 29 100.0 32 ............................. AGGTTGCGGCACAAATTGAGGTTGTCGCAAAT 4118482 29 100.0 32 ............................. CCGACGCAGCAGCGGCAGCAGCGGCAGCAGCG 4118543 29 100.0 32 ............................. TGGATCAGTGCCGCGTTCTCTCTCCGTGTAAT 4118604 29 100.0 32 ............................. ATCGAGACGGGTACGCGTAAAGCCGAGCTGGC 4118665 29 100.0 32 ............................. CGATCGGTTAATTCTTCTACCTGCCTTTGCAG 4118726 29 100.0 32 ............................. CCCGCAATGCATTCGGGCAGTTCCTTGCCGGG 4118787 29 100.0 32 ............................. GAGATTGAGCCAGACGCCCGCCAGGTGTTACT 4118848 29 100.0 32 ............................. GAAGTAACACACCCAACCCAGGTTGCGCCAGA 4118909 29 100.0 32 ............................. CCTGTTTGAGCAGGCGCGAATGAACCGGACCA 4118970 29 100.0 32 ............................. TCAGGTAAGCCAGTGTTAGGGGCAATATAGCA 4119031 29 100.0 32 ............................. TCATCGGCTCGTTATTTGTAGCCAGCACTACG 4119092 29 100.0 32 ............................. CTTTATCAGATGGTAAAGGTGAATCAATATGA 4119153 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 4119214 29 100.0 32 ............................. TGCAACCAGGACGGCAGGACGCATCGCCAGAT 4119275 29 100.0 32 ............................. CACGTTATTATCCGATATTCACCGATAAGCGT 4119336 29 100.0 32 ............................. TCTGGGCGTAAACAGTCGGATAAATCGCGGGT 4119397 29 100.0 32 ............................. GCGGCGTGTGGGGTAACAATCAGGGAGAGAAA 4119458 29 100.0 33 ............................. GATAAATACAGTATATTCCCGCGCTCTGCTGGC 4119520 29 100.0 32 ............................. TAGATTTTGTCCGGCTCAGGTGCGCCGATGGT 4119581 29 100.0 32 ............................. ATCGAGTACAACAAAAAATATACTGAGTGAGT 4119642 29 100.0 32 ............................. CTGTTTGCTCCTGCTGCTCATTTAGTGATTTA 4119703 29 100.0 32 ............................. CCTGTTCTTTTTTAGTCAACTTAACCATGCTC 4119764 29 100.0 32 ............................. TCTTTTTCGAGACTTGCAGCAACGCTCTGAAA 4119825 29 100.0 32 ............................. ATCGAGTAGTTTTGAGGGTTGGTGAATTCAGG 4119886 29 100.0 32 ............................. CTTAATAAATGGACTTAAGCGCCCAGTATTGG 4119947 29 100.0 32 ............................. GGGAGGGCGAGCCGCCGTAGGTGCGGTGAGGG 4120008 29 100.0 32 ............................. ACGCAGAAACTGGTTGAAATAGTTTACGGTGA 4120069 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC 4120130 29 100.0 32 ............................. GTGGCGGTGTGATTGTGGGACTTATTGCCATC 4120191 29 100.0 32 ............................. GGCCTTTTCAGCAGATTAACCGCCGCGATTGC 4120252 29 100.0 33 ............................. AGAGATTTATATTCTTTCAAACCGGATTATATC 4120314 29 100.0 32 ............................. CTTCAAGAATTTTTAAACGCTGGCTTCAAAAT 4120375 29 100.0 32 ............................. TCCCACGCGTGCCAGATGGCGCGTTTGATGGC 4120436 29 100.0 32 ............................. ATGATAACGGCAAAGGGTACGCTACGTACAAC 4120497 29 93.1 32 .....................T.....T. TGATCCAGTGAGTACCGATCCGGGAACAACCG 4120558 29 89.7 0 .......T...AT................ | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCCGACACCGTTACAGCAAAAGGTGCTGGATCTGGATATCAGCCAGCCAGGGCCACAGTTATTTATTCTGGAAGATGTGACTGGCGCAGGTAAAACGGAAGCGGCGCTTATCCTGGCGCACAGGTTGATGGCTGCGGGTAAAGCGCAGGGTTTGTTTTTTGGCCTGCCAACAATGGCAACGGCCAATGCCATGTATGATCGGCTCGTCAAAACCTGGCTTTCTTTCTATTCGCCAGAATCTCGCCCCAGCCTGGTGCTGGCACACAGTGCCCGCACATTAATGGACCGCTTTAATGAATCACTCTGGTCCGGTGATTTAATCGGGTCAGAAGAACCGGATGAACAAGCTTTCAGCCAGGGTTGTGCGGCCTGGTTTGCCGACAGTAACAAGAAGGCGTTGCTGGCTGAAATTGGCGTCGGCACCCTGGATCAGGCGATGATGGCAGTGATGCCGTTTAAACATAATAATCTGCGGCTTCTGGGGCTGAGTAACAAAATC # Right flank : GGGTGCACTGGATGCGATGATGGATATCACTTGGCGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCGGCGTCATTACAACATCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //