Array 1 380519-382498 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQSE01000001.1 Salmonella enterica subsp. enterica serovar Albany strain SCMYP1 NODE_1_length_509980_cov_167.694267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 380519 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 380580 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 380641 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 380702 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 380763 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 380824 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 380885 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 380946 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 381007 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 381068 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 381129 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 381190 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 381251 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 381312 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 381373 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 381434 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 381495 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 381556 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 381617 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 381678 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 381739 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 381800 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 381861 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 381922 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 381983 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 382044 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 382105 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 382166 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 382227 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 382288 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 382349 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 382410 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 382471 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 399056-401954 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQSE01000001.1 Salmonella enterica subsp. enterica serovar Albany strain SCMYP1 NODE_1_length_509980_cov_167.694267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 399056 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 399117 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 399178 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 399239 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 399300 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 399361 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 399422 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 399483 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 399544 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 399605 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 399666 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 399727 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 399788 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 399849 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 399910 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 399971 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 400032 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 400093 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 400154 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 400215 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 400276 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 400337 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 400398 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 400459 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 400520 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 400581 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 400642 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 400703 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 400764 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 400825 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 400886 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 400947 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 401008 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 401070 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 401131 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 401192 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 401253 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 401314 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 401375 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 401436 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 401497 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 401559 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 401620 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 401681 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 401742 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 401803 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 401864 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 401925 29 100.0 0 ............................. | A [401952] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //