Array 1 5358-7337 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWD01000020.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5813 NODE_20_length_90901_cov_72.552680, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5358 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 5419 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 5480 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 5541 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 5602 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 5663 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 5724 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 5785 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 5846 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 5907 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 5968 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 6029 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 6090 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 6151 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 6212 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 6273 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 6334 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 6395 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 6456 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 6517 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 6578 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 6639 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 6700 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 6761 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 6822 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 6883 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 6944 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 7005 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7066 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7127 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7188 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7249 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7310 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23910-25769 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWD01000020.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5813 NODE_20_length_90901_cov_72.552680, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23910 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 23971 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 24032 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 24093 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 24154 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 24215 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 24276 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 24337 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 24398 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 24459 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 24520 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 24581 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 24642 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 24703 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 24764 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 24825 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 24886 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 24947 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 25008 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 25069 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 25130 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 25191 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 25252 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 25313 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 25374 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 25435 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 25496 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 25557 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 25618 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 25679 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 25740 29 96.6 0 ............T................ | A [25767] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //