Array 1 724008-724157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFS010000001.1 Nocardiopsis aegyptia strain DSM 44442 Ga0415199_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 724008 28 96.4 33 ..........T................. TGACGATCGCCTGCGCCACCATGTCCGCATCCG 724069 28 100.0 33 ............................ GACGGAGTGCGCCGCCACTGCACCCGCTACACC 724130 28 96.4 0 .....C...................... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 GTGAGTCCCGCGGACGCGGGGATGGACC # Left flank : TCCATACCGGACCCTAAATCAGAAACTCCTGAGCCACGACACCATTCAAGCCCCAATAAGACAGCAAATCTCCCAACCGGAACGAAGCTGGCGCCCCGGGGCCCGGTCTTCGAGGTTCGCGATGGACGTTCGCCGAGTCCCTTCGTATGCGCCCCTACCCGAGGAGAGCGACCGGGCCTGGGAGTGGGCCACGTGTCCGCGCAGCGGTATGGCCGGGCTGCTGGTGCCCGCCGACCACGAGGGCTACCGGTGGCGGGACTTCGATTACCTCACCATCCAGGACCCCCTGCCCGACGCCGTGTGGCAGAACGCTCTGGAGGAGGCCACCGACCAGGACCGTTTCACCATCGGCCTCACGGCCTCACGGCCTACCGCGCTGAACGGGCCGACATAGCTGAAACAGCCTGGGAACCCTTGGCCGAACACGGCGACATCGACGCGATGTGCAACCTCGGAGTCTTGCGGGAGGAAGCGGGCAGGGTGAGCGAGACCGAGGACTG # Right flank : CGACCGCACCCGGAACGCCACCGAACACTGGCCCATTGGCAAAAGGAAGCGGGCGCTGCGCTGCCCAAAAACCTGGTTCATCGGTGTCAGCGATCCCGACTGCACAACGCAGGGCTGGCCACATGCGGCCCTGGGGCTTGGACGAGAGCAGGGGCCGACATGTGGCCAGCCCTGCCGTCCGCCTAGCTAGTCGGCCCGATTCGTTGAGGGGCCGGGGCAGACAGTCAAGACGGTCAGCGCCTCGAGGCGGTCGGCCCCGTTGGTTCCATCGGCCCGGACGATCTCCAGTAGGCCGATGGGGCCGGCTGCCAGGCCGGTGTTCGGGAGTGAACGCATCATCCGCACGAGTGGTCGTGCCCGCTCACAACCCCTTGGCCGTCCCCCGAGTCCTCCAGACGCTGCTGGCCGGTGCATCGGTAGCGGATCTCGTTGCGGTTGTCGCCCACGCGCACCAGGTGAACGCGCACGCACCGGACTCGTACACGCATGGACGTACACCC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGTCCCGCGGACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 742633-743148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFS010000001.1 Nocardiopsis aegyptia strain DSM 44442 Ga0415199_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 742633 29 100.0 32 ............................. GTGGGCACGTGCTGGGCGGACACCTCGGCGCC 742694 29 100.0 32 ............................. ACGCGCCGCCGTTCCCGCTGCCGAGCGGCCAC 742755 29 100.0 32 ............................. GCCCCGGCATCAAACCGGGGCCCGAAGGTCAA 742816 29 100.0 32 ............................. GCGAGCATCCCCGCCGCCGCACGGGCCCGGGT 742877 29 96.6 32 ............................T CCGCAGTTCCAGGAGTTCCTGGCCTACATTCA 742938 29 100.0 32 ............................. CCCAACACCTTTTTCTGCACTATGACCCGGAC 742999 29 100.0 31 ............................. AACTCCTCGCCTCTACCCGTGGACCTGCTGT 743059 29 96.6 32 .G........................... ACCGGTGAGGAGATCGGGTTCACCGCCCCCAT 743120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGAGCCCCGCGGACGCGGGGATGGACCG # Left flank : GGAAAGCTGCCCCCGCGGCCATCCGGGTGGGAGACCGTGGCCGCCATGGTCGACGTCTCCCAGCACATGCTGGACATCGCCGGTCGAGGCGTGCTCAGCCGTTGCTGGTTTCACCCGGTTCTGGCTCCCGATATGCGGGCCTTACCGGAGACCAGGCGGGGCTCGGCCCTGCTGTGCCTCGGTGGTGCCCTCGGACAGGGGGCGGGGTGGGGGGGTAGGGCATGCGCAGGCAGGTGCACGGTACGTCGATGACCATCTGCATCTCCTCCTCGGAGGGGGCGCTGTCGAGGGGTGGGCGGATCGCGGCGCGTTCTGGTTGGAGGGAGTGCTGGGGCTTTCTGGTCAGGCAGAGAGCTCAACGGGCGAGTCTTTTGTGGGACGCTGGGTACGGGTTCTTGGCCCTGCCGTGGGTTGGGGAGGATCTGTCTCATGGGCTTTCGGGCTCACAGTCGTGAAGGTTGCGGGGAGATAACGCTCTGGGTTTGTGCAGGTCATTTGCT # Right flank : GTCCGGGCTGATCGGCGACCCCGACCTGGGCAGGATCATCCAAGCGGTGGACGTGCTCTCAGAGCTACCGCTGCCCGACGTAGCGAAGGAGTGGGAAGAGACCCGGTGGGACCGGTTCGCGACCGACGACGAACAGCAGCTTCTCCGGGGCGACATCCTCACGCACACCGACATCCACCACAACAACGTCCTGGTCAGCCCGGTTCGGATGTGGGTTGTGGACTGGGAATGGCCTACCCGCGGTTCTGAGGCCATCACCCCGTCCGCGTTGGCGGTGCAGCTCGTGGCTGCCGGGCACAGCCCTGCCGGCGCCGAAGGGTGGTTGGCCAGCGGGCGGGTGTGGAAGCGCTGCGGGCGGGAGGCGTTGAACGCGTTCGCGCGGGCGAACGCGCGGATGAATCGGCGCTTCGCCGGGCTTCGGCCAGACGAGCAGTGGCTGGAAGCGATGGCGGTAGCGGCTGAGTCCTGGTCGGAGCACCTAGAGCGGAGATGAGAGGACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGGACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 751936-751611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCFS010000001.1 Nocardiopsis aegyptia strain DSM 44442 Ga0415199_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 751935 37 100.0 37 ..................................... ACTTCACGGTTGGCCACGAACTCTTTGCCATCCTCGC 751861 37 100.0 34 ..................................... TCGATGAACGCCTCGATCTGCTCCAGCAAGTAGA 751790 37 100.0 31 ..................................... TGGCCACGCTCGAGCTCTTCGTAGGAGCAGA 751722 37 100.0 37 ..................................... TCGAAGCCACTGCCCTCAGAGTCGTTACCCTGGTTGC 751648 37 89.2 0 ...................A.T.........C...C. | A [751616] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 97.8 35 GTTCCGAAGGACGTCAAAGCCCGAAGGGCATGGAAAC # Left flank : TCTCCAGCAGGTGGCAGGCCAGAGCGTGCAGATGGGACGGGGAGACCGAGGGATGTGGTGGGGGTGTGGGGGTGAGTGTCCACCATGTGGGCACACGGCCTCCTCGGGGGGTGCTCTCGCAGGGGTGAGGAAAGCAGGTATCCGGGTGTGGGGTGCGGGAGGCCGTCACCGGGTGGAGCCACGGTAACAACACAGAGCCCGGCGTGTCAGGGGAAAACGGGATGTGGTCGTTTCCGGCGCGGGTCTGGCGGCGGGGATGCCGTTGGGTGAGGATGGCAGAGGGTCTGGGCCTACCACTTGGACTGGGTGGAGGTGCATTCTTGTACACCGAACTTGGTTCGGGTGCGGGAAGGCCGGTTTGCGTGCAGAGCGTTTGTGCTGTTCAGAGGCCTGTAAGTGCGGTTTGTTATCTGAGGCACATGGGTTGTGTCGCTGTGGAGGGCGGTCGCGTGCAGAGGGGGTGCATCAGCGCAGTTCAGAGGCCATGAAATTGGGCAAGG # Right flank : AAAAAAGAATTCTGCCCAGTCCTCGAGAGCCCGCGAAATGGGAGACCTTCTCCGTCAGGCCGCAGACAGCGAACGACTCTTCTCCGCGTGGAACGAGGTCCGCGACAACGACCTGTAGGACGGCGTCAAGTCAGATCAGGTCCAGAAGTTCGAACGGGGCGCTCTGAGCAACCTGGTGGAGTTGAGCGAACAGCTCCGGACCGGGGAGTACGAACCCGGCCCGGTGGTGGCCATCGAGGTGCCCAAGTCTTCGGGTGGGACCCGGCTCCTCGCGATTCCCGCTGTACGGGACCGCATCGTCGAACGCGCCGTGCTGGAGGTCATCGAACCCTTCCTGGACCCGGTGCTCTCACCCTGGAGCTTCGCCTACCGCACCGGGCTTGGAGTCAACGACGCGATACGCGCCCTCGTCCAGGCCCGCGAAGCAGGCGCCCGCTGGGTGGTGCGCGCTGACATCGCCGACTGCTTCGAACGCATCCCCCGCTGGCCCGTCGTCACCC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGAAGGACGTCAAAGCCCGAAGGGCATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //