Array 1 3440-2221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTKP01000017.1 Staphylococcus pseudintermedius strain 9841998-1 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3439 36 100.0 30 .................................... AAAGAACTTACCAAAACCTTTCTTTGTTTC 3373 36 100.0 29 .................................... GTTTTCGTATATCTTTTAGCATTTGTTAC 3308 36 100.0 30 .................................... TCATTGTGGATATTTTCAAGCAGTGCTTCT 3242 36 100.0 31 .................................... GTGTGTCATCAGACTTTACACCTTCAAATAC 3175 36 100.0 29 .................................... GAACTCTTAAAGTATCTTTTAGGACACTT 3110 36 100.0 30 .................................... AAAGATTATGCCATCTTCAGTTACTTTAAC 3044 36 100.0 29 .................................... TCGTTTTGTGATAACAAATCAAGTGATAT 2979 36 100.0 30 .................................... GATTATGGTGTCGAATCAAAATCAAATTAC 2913 36 100.0 30 .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 2847 36 100.0 29 .................................... TATACGTGCAAACGGTTCTCTTTTAATTT 2782 36 100.0 30 .................................... CGGCACAGATTGTGTGATTTGTTGACCTGC 2716 36 100.0 30 .................................... TCAAAAGTATTTCGTCGAGATGGAGCGACT 2650 36 100.0 30 .................................... TGAAGATTTTCCACGCCAATGTATTTTTAT 2584 36 100.0 29 .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 2519 36 97.2 29 ............................A....... GTTAACTGAACTCGAGTGTTGGCGCTTGA 2454 36 97.2 30 ............................A....... ACAGGCTTAAAGAATCATTACAGTTTGCTA 2388 36 97.2 29 ............................A....... AGTAATGATTTAGAAAAGCGTGAGCATAA 2323 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 2257 35 83.3 0 T........T................-.CA.C.... | CT [2224] ========== ====== ====== ====== ==================================== =============================== ================== 19 36 98.5 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATATTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //