Array 1 49980-49645 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHS01000006.1 Aerococcus urinae strain UMB0088 .16933_8_23.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 49979 30 100.0 31 .............................. TGTAGGTGGAGAGAAAATGAGCAAAATTGTA 49918 30 100.0 31 .............................. ACGCTACTCTAGTCTTAAAGGTGGACGACAT 49857 30 100.0 31 .............................. TGTTGGAAGGTATATTTAGACAACTAATAAA 49796 30 96.7 31 ............................C. ACCGCGTTATACGTGCTGCTGCCTTCTGATT 49735 30 100.0 31 .............................. TGATAAGCACAAACCCATTACAAGATTCATT 49674 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.9 31 CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Left flank : GCAAATTGCTATGTGCTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGAAATCTGATCAAATTACAAATTCACCGGATTATTGAGTCAGAGTATGATTTTGGCCGGCGTGACAATGCCTTATTATGTCCGCACTGTCAGGAACAGCTGGGCTCTTTGAGTGAACATAAGGGCCGGCCTTGTTATTTCTTGCACCGAGGACGAGTACAGACCAAACGCTTGCAGCATTATAAAAGCTAGCCAAGGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGGAATTGGGTAGGTTAGGAATGACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AGCAAGGCGAATTAGCTTTTAACGAAAAAGGCTTTTTCCCGCATTTATTTGGAAATTAATAATATTTGATTTAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGCTTTGATCAATATTTCTTTTGAAATCATCAGCTCGATTTATCCAAGCCTTGGGGTGGACATGCTATAATATAAAAGTAAAATAACTTTATCATCCTTTCCTGTGATAGGAGGATTTAAAGCAAGTAGGTATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACTCGGAGTGTTTTCATATCTGGGTCGAGAACGCAAAACCAATTATCCCAAGAAGTACTAGATTCCATTGACGCAATTATTGACCAAGGCATAAAGATTAACCTAGGGGATTCCAACAAGGGGGTCGATAAGGAAGTGGCTGACTTGCTTCGACTTGAAAATTATCAGGCGGTTGAAATCTTCACCATTAATCAAAAGCCACGGATTGCCATTGAAAAGGACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 6438-5675 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHS01000018.1 Aerococcus urinae strain UMB0088 .16933_8_23.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 6437 32 100.0 34 ................................ CTTTTGGTACCTCTGCGATCGCCTCATCATGGAC 6371 32 100.0 34 ................................ AACGCTGATCCGTAGGTTAACCCCTCGTCTCTAC 6305 32 100.0 34 ................................ AATAACAACTGGTTTCTTTCTGTATTTCATTAAC 6239 32 100.0 38 ................................ ATAATATGGGCTTAGATTTTAAAGAAGGTAGTGTGAGT 6169 32 100.0 35 ................................ CATTTTTCTGATCATGTCGTAGATCTCTTGTTTGC 6102 32 100.0 34 ................................ CGCAATATGCGAATGGTATTGGGTTTTCTACCGG 6036 32 96.9 34 ..........A..................... AAGTGGACTAACCGCCATCTTTCTTTAGGGCCGT 5970 32 96.9 35 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCGG 5903 32 96.9 34 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCG 5837 32 96.9 33 ..........A..................... CCTCCTACTTAAACTTCTGATCATCCATATATC 5772 32 96.9 34 ..........A..................... TAAGAATTGTTGAAACCATGAGTGAAATTCGCTT 5706 32 84.4 0 .......A....A...A...AC.......... | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 97.4 35 GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Left flank : AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTAAGATGATGGTGTTAATTACTTATGATGTGAATACCGAAAGTAAGGCTGGCCAGAAACGCTTACGTAAGGTGGCTAAGGTCTGTGTTGATTATGGTCAACGCGTTCAAAATTCCGTTTTTGAATGTAGCTTAGATCCTGGGCAATTGGCACTCGTTAAATCGAAATTAGATGGTATCATAGATAGTGAAGTCGACTCGATTCGTTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACCTTAGGACGGGACGATACCTATCACCCTGAAAAGGATGTCTTACTCTTATAACGAACCCCAAGCACACAGAATTGTATCGGTAGCTTCGTTTGTATTTTGGACTCAAAAATACAATATAAGTGATTATTTTGCTCTTTTTATAACACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCT # Right flank : TGTAATTGCTGATAGTATCAACATTAGTAACGAGGGTTCAGACTTTTTGTCTGTATGGATTGAATTATCAGTTAACGAAAAAGCGATACGTTTTTCTTGTCGCAATTTATACACTTATGTAGGTAGAAATTAATATGCGGCTAAGTATTACAAATATGGTCCAAAGTTGTAGGCTTTCTTTCAGCAAAGATTGACTATTTATACCAAGCAATCAGCCCTTGCCAGCTCCTCCATCAGCGAGCTCAACAAGGGCTTTTTCTATTACATCGACTCATAAAAGCACTAAAAAAATTAACCCAATCCCAAAAATAAATCACAGCCCCACTAAAACCGATCATTCTTGATCCTTTTTCCTAAGTTGACAGTAGTCCTTGGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA //