Array 1 337669-339691 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYT01000001.1 Bartonella apis strain PEB0149 NODE_1_len_1448678_cov_97_6187_ID_1.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================= ================== 337669 36 94.4 30 C.A................................. TTCTTAAAGGTTCGCCCTTCACCTTCTGCA 337735 36 100.0 31 .................................... TGACGTCCCGGTGATGCCGTCCTTGCTATCC 337802 36 100.0 31 .................................... TGCCGACGCAGTTCGATCAGCGCATCAATGA 337869 36 100.0 31 .................................... CTCGATTGCGCCGTGAGTTTTCCGCCAAATG 337936 36 100.0 30 .................................... ACATAACCAAATAAGCAAATACCGCAATAG 338002 36 86.1 97 ...............................GTGTT CAGGCTGCAATATTGGCTTTTTTGACCATGCTTGCAGCCTGATCGCGTTTTATATAGGCTGATACATGTGGCCAAGTTCTGATCTCTGAAGTCGTTT 338135 36 100.0 30 .................................... GTAAAACGATTAATCAATTATCTGCTCCCT 338201 36 100.0 30 .................................... TTTGAGCCCATTGCCAACAACTGCTGTATA 338267 36 100.0 30 .................................... AGCTACTATTCCTAATGTTGAGCAGCATCT 338333 36 100.0 30 .................................... CGCTGCTTTGTTTTATAGCTTTGCAAGAGT 338399 36 100.0 30 .................................... ATTGCCGTCGTCGTTTTCATCTCCGACCGT 338465 36 100.0 30 .................................... CACGGGGTTGTTGTCTTGCTGGTGTTTTTT 338531 36 100.0 30 .................................... GATAAGGAACGGTTGTTCAGGGAGCTTATG 338597 36 100.0 30 .................................... CGTCGCGGGCGACATGGCCGCTATTATACC 338663 36 100.0 31 .................................... CAGCATCACAACCAACCAACACTCGTCCAGA 338730 36 100.0 31 .................................... AAGCCTCATTTTGGCTGCGACGGAGCATTTG 338797 36 100.0 30 .................................... CAACGAGTAACCAAGAGGCAATCATGCCAT 338863 36 100.0 30 .................................... GAAGATTGGCGAAAAGTTGCAGCTTTTTTC 338929 36 100.0 30 .................................... GCCGAAGGACAACTGGAAGATGTCTATTAT 338995 36 100.0 30 .................................... ATATTGATGCGCGTTATGACGCGCCAACTT 339061 36 100.0 30 .................................... GTCGGCTTTGCAGGTTGTGCGAACCGGCAC 339127 36 100.0 31 .................................... AAGCGCTGCGCGAGAATAAGGATCGACGATT 339194 36 100.0 30 .................................... TTTTTCGTTTGTTTGTTTATCGGATATATC 339260 36 100.0 30 .................................... CGCGACAGATTTTCAGGGTATTTATTAAAA 339326 36 100.0 30 .................................... TTTTTCGTTTGTTTGTTTATCGGATATATC 339392 36 97.2 30 ............................C....... TCAAAGATATGAAAGTGTCGAACTGGTTTG 339458 36 100.0 30 .................................... CACTACAGCGCCGTTTGATTGCGCGTTCCC 339524 36 100.0 30 .................................... ATATTATACACTGTAACAACCATATCGAAA 339590 36 97.2 30 ....T............................... CCAATCAAGCCATTTCTGAAGATCAACATA 339656 36 97.2 0 ....T............................... | ========== ====== ====== ====== ==================================== ================================================================================================= ================== 30 36 99.1 33 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGGAAGGTGCTGATGGCGGGGTCTCTCGTCTCGGCAATGTTTACTGCTTCCAATGGCCTGTTTTACCCCACCACACCCTATTTGTTGATGATTGTCGTGCTCCTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCAAGCTCCTTTCACAGCAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGCGATGCGGGACATGCTTTGAACGAAAAAAGCAAACAATCCGCGGCACAACACTGATGAAACCAAAACATATTCG # Right flank : CTGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACTTGTCGTCCATGTTTTACCTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGACCCACCCTTGAAAAAATATCGACATTTCATCGTTCGGGCAAGGTAGAAGCGATCTTACCAATACAGGATCAGCCGGCATGTTCGGGCTTTTTTTTAGAAAGACCTCAAGCAATTTTGTGAACCGCTGTTTCGATTTTTTAAGATAGCTTTCCGTTGTTAAAACGCTTGTGAATGCGCCGTTCTGCATAATAAGCAGCCCGCTTTGATAAAGTGGGCTTAAGACAGCGTGATAAACCGTAAGACAGCGTGATAAACCGGTTTGTCACATCCGGTTTGCTTTTGCCAATTTTTAAGCGTGGCTAAAACTGAACGAGCCTGCCCCACTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 343548-343715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYT01000001.1 Bartonella apis strain PEB0149 NODE_1_len_1448678_cov_97_6187_ID_1.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 343548 36 100.0 30 .................................... GAAAAATGAGACGGGCTGCCAAAAGAGACA 343614 36 100.0 30 .................................... CCGCCATAAGCGGTTGTGCATTAGGATCAT 343680 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CGTCGCCGGAAGTTTGCAAATTACCGGACCAAGAATTTTCATTCAACAATCATGTGCTCATGTTTGATGCCGATGATGGCACAATGGGAGAATTAGAGAGCATCTGCAAAGCCAAAAAAATATTTTTGACGCCCGATAAGAAATATCACATAACATGGCAATGTGATGATGTCGGGGAAAGATACAACCAATCAATGGAGCTAAAAATCCTGCCACATACGGTTCTAATAGATGGTATTGAATATATGCGTTGTGAAAGAAATCAAGACGGAACGTTATGAGCTAACAAGAGCTTTTTTCAGCTTTTTGCCTGCTTGTTCTTTTCTTGCATGATCCTTGCATCAATAGCGTCACGGATGAATTTTGCACGACCATGATTGCCGACTAAAGCTTTAATACCATCCAAGTGTTTTTGAGTTAAATATGCCATCACCGGTATTGTCGGCTGTTTATTTTTGGGAGGATTAAGTTTTGCTTCAACCGCATCACGGATGAATTCT # Right flank : CCGATGTCCACTTAACTCTTTGTTTTATAAGGTTTAAGAGGACATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGAGCTGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGAAAAATATAGACGTTTCCTCGTTCAGGCAAGGAGCATTCGATCTTCCTGACATAAGATTCAAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTCGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTGTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATCTTCTCCCCATGCCTCATCAATTTGGACCGAACTGTTTTCCAAAGAAAAAATTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //