Array 1 162669-160704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESE010000002.1 Salmonella sp. 32031103201600284SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162668 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162607 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162546 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162485 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162424 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162363 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162302 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162240 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162179 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162118 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162057 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161996 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161935 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161874 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161813 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161752 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161691 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161630 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161569 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161508 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161447 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161385 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161282 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161221 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161160 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161099 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161038 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160977 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160916 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160855 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160794 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160733 29 96.6 0 A............................ | A [160706] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180293-178800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESE010000002.1 Salmonella sp. 32031103201600284SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180292 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180231 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180170 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180109 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180048 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179987 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179926 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179865 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179804 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179743 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179682 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179621 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179560 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179499 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179438 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179377 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179315 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179254 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179193 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179132 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179071 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179010 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178949 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178888 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178827 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //