Array 1 97842-99822 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYK01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM1559 BCW_8414_1__paired__contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97842 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97903 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97964 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98025 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98086 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98147 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98208 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98269 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98330 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98391 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98452 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98513 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98574 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98635 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98696 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98757 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98818 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98879 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98940 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99001 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99062 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99123 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99184 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99245 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99307 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99368 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99429 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99490 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99551 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99612 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99673 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99734 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99795 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115955-117431 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZYK01000030.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO STM1559 BCW_8414_1__paired__contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 115955 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116016 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116077 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116138 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116200 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116261 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116322 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116383 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116444 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116505 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116566 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116627 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116688 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116749 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116810 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116871 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116933 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117036 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117097 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117158 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117219 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117280 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117341 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117402 29 96.6 0 A............................ | A [117428] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //