Array 1 206574-204746 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRDJ01000007.1 Kushneria indalinina DSM 14324 Ga0215643_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 206573 28 100.0 32 ............................ TATGGAGCAGGGTAGTATGATAACCGCTTATA 206513 28 100.0 32 ............................ TCGGTCGTCAGCGTATACGTATTGGTCTTGGC 206453 28 100.0 32 ............................ TGTCTCGCCTGGGGCATGAAGGTACAGCAGAA 206393 28 100.0 32 ............................ TACAGTTAAGACACGCTTCCATTTACCCCAGC 206333 28 100.0 32 ............................ TTGAATCGGTCAATCGCGACCTTAATGAGGTT 206273 28 100.0 32 ............................ AGCAGGCGGGCCAGGCTATCAGCCTGTGAGTT 206213 28 100.0 32 ............................ AGCCCGGCAGTGTCAGCGGAAACTGGGACTGG 206153 28 100.0 32 ............................ ACATCGAGGCGATCGAGTTCATCACGAATGAT 206093 28 100.0 32 ............................ ACACCAGAGCAGGAGCGCACGTAAACGTTCCC 206033 28 100.0 32 ............................ TATACCGGGCAGCGCATCACGCTCGAGGAGCC 205973 28 100.0 32 ............................ AGTTTGCGAAAGGCGTCGACGGTGGTGTCGGC 205913 28 100.0 32 ............................ ATGCCGACGCGACGGTTGTAATCACCGGTCGA 205853 28 96.4 32 .............T.............. GATGATGAGGCCGTACTGGCGCAGGCGCCCCG 205793 28 96.4 32 .............T.............. TGGAGCGCAAGCGGGGCACCGTCGAGGCCGAG 205733 28 96.4 32 .............T.............. AGATGGCGCGCCCGTCTTTCTTCAAACGCGAC 205673 28 100.0 32 ............................ ATGACGTGCGCCGAGGTGTGCAAGCGGATCAA 205613 28 96.4 32 .............T.............. AGCGCGTGACCGTGCCGCGCTCGCAGACAAGC 205553 28 96.4 32 .............T.............. CGGCCAAAGGCGTGTCACGCGCACAGGATAGC 205493 28 96.4 32 .............T.............. AGCGAGATCTCCGAGCTGGAGCACCGCGCCAG 205433 28 96.4 32 .............T.............. AGCAGGCGTTCTTCGGCGGGCAGCTCAAAGCC 205373 28 96.4 32 .............T.............. GTCCAGCACCTATAGGCGCGTAGCGCCTGAAA 205313 28 96.4 32 .............T.............. GGTATCGGGTCGAGGTCGAATTACGTTCGCAC 205253 28 96.4 32 .............T.............. CTCTGGCGGTTCTATCGGTGGTGGTGGCGGTG 205193 28 96.4 32 .............T.............. GTGGAGCCGCCCGTGGTGCCGCCCGTGGTGCC 205133 28 100.0 32 ............................ ACGTGGGCCTGCGCTACGCGATCGCTCGCAAG 205073 28 100.0 32 ............................ ACTGACGCGGCAATCGAAACGGCGATATTCAA 205013 28 100.0 32 ............................ CGCGACCGCGCCCGCGAAATCTACCTGACGGC 204953 28 100.0 32 ............................ CAGATCAGCCTCCACCATCAGCCCCCATAGCT 204893 28 100.0 32 ............................ AGCTTTCTCAGCCAGCGACGCAGCCGATTACG 204833 28 96.4 32 ........................A... ATAACCTTCTGGATCAGCGTCGCATTGAGCTC 204773 28 85.7 0 ............AT...T.....G.... | ========== ====== ====== ====== ============================ ================================ ================== 31 28 98.1 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : GGTGGTGCGCTGGCTGGATGAGCAGGCCAGCGAGGCGGTGTTTGTAACGGCCATTACCGTGGCAGAGATTCTTCACGGCATCGCTCGTCTGCCGGAAGGCGCTCGGCGTCGTCGGTTGGCGGATGCTGCAGCCGGGATGCTGGAAGAGGATCTGGCGGGCAAAGTCCTGCCCTTCGATACTGACTCGGCGGTAATCTACAGCCGGTGTGTGGCAGCGCGCGAAAACAGCGGTCGACCGATCGGCATGGCCGATGCTCAGATTGCTGCTATCTGCCTGCAACATCAGGCAATGCTGGCCACGCGCAATCTAAAAGACTTTGAAGGACTGTCGATGACACTGCATGATCCATGGCAGGCGCATCAGGCAGGATGACCCTTTTTTGATCGGCTGCTGTCGCTCTTTAAAAATCAACGCGTTAAAAGCAGGCTGGAAAAAGGGTTTTTGGCGGATTTCGCCGGTGAGCCCGGTAGACCAGGGCTTTCCGGCGACATAGCCTCTA # Right flank : CGCTCAACACCTGCAGGAAGCGCAGCGCCAGTGTTCGCTGCCGCGCGCCTCCCGGCCTCTGGCTCGGCGCTGCCACAAGCCCTGGTGTCAGGCCGTCTCGTTGCGGGTCTCTTCGCCCAGACGTCGTCTGGCCCCCGGGGAGCGACAGGCCGCGGCGGTAAAGAGCACGTCGGTGGAGGAGTTGAGTGCGGTCTCCGTGGAGTCCTGCAGCACGCTGATGACAAAGCCAACGGCGACGATCTGCATCGCGACGTCGGCGGAAATGCCGAACAGGCTCGCCGCCATCGGAATCAGCAGCAGCGAGCCGCCGGCCACCCCGGAAACGCCGCAGGCCGCGAGGGCCGAGACCACGCAGAGCAGAAACGCGGTCAGGAAATCGACGCCCAGGCCCAGCGTGTTCGTCGCGGCAAGCGTCATTACGGTGATCGTGATCGCCGCGCCGGACATGTTGATCGTCGCGCCCAGCGGGATCGACACCGAGTAGGTGTCGCGATGCAGCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : GTTCGCTGCCGCCTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 215940-217046 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRDJ01000007.1 Kushneria indalinina DSM 14324 Ga0215643_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 215940 28 100.0 32 ............................ TGGATAACGTCATTCGTGTACCCGATAGTAGG 216000 28 100.0 32 ............................ CGCTCAAGGCCGAACAGCTCATCGCTATGCGT 216060 28 100.0 32 ............................ TGCTCATCGCTGATGACGTGGAATCGCAGAAG 216120 28 100.0 32 ............................ ATCGGCAGCTGGGCGTAAGTCATGACGATCGA 216180 28 100.0 32 ............................ CGATCGAATGCATAGGTGCCGCCGCTGTTTTG 216240 28 100.0 32 ............................ TTGGTGCAGCGGTCGCGCACGCTCTCCGGCAT 216300 28 100.0 32 ............................ AGCAGGGCGATGCCGGTGCGCGATCCCAGCAA 216360 28 100.0 32 ............................ ATCTCGCATGTAAGATGACGGCCAGACAAAGA 216420 28 100.0 32 ............................ GATATGGTTGGGGAAGTGTTGCTCTAGTGCTT 216480 28 100.0 32 ............................ TAGCTCAATGCGCGTTCCGCGCGGCAGATACG 216540 28 100.0 32 ............................ ACGATTTCTGTTCCTTCTGGTTCTTCTCTCGA 216600 28 100.0 32 ............................ AATGGGGCCGAGCTGCACTTTTTGGGCACCAA 216660 28 100.0 32 ............................ ACGTATCGATCCAACCCCGAGGCCGAGGTGCC 216720 28 100.0 32 ............................ ATTGATACAATCAAGGCACATTACAGACCAAA 216780 28 96.4 32 .............T.............. AATACGTCACCATGCGGCCTGCAGTATCACGA 216840 28 100.0 32 ............................ AATTCTGGCAGTTGTCATCATAGCATCAGATT 216900 28 100.0 31 ............................ TGGCGCAGAACAAGCGCAACGAGCGATTCAC 216959 28 96.4 32 ...G........................ TGCGCGATGACATCGAGCAAACCATGACGCTG 217019 28 82.1 0 ...G.A......A........G.G.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.7 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CCGGCTCGAACAGCTGATGGCACTGCCATGGCTGGCCGGTCTGAGCGAGCTTGTCGAACACGGTGGCATTACGTCCGTGCCGGAGAGCGCACAGCACCGGGTGGTTCAGCGGCGGCAGTTCAATACCGGCAGTCCCAGTCGCGCCAGACGCTACGCTCGCCGCCATGACGTGTCGGAGGCCGAGGCACAGCAATTGATGAGCGCCCCCGCCGAGCGACGCATCGAACTGCCGTTTGTGCAGATCGCCAGCCGCTCCACGGGCGAACGCTTCGCGCTGTTTATCGAGCATGGCCAGCTGCAGTCGAACCCCGCCTCGGGACGCTTCAACCAGTATGGGCTAAGCCGGGAAGCCACCATCCCCTGGTTTTAACCCTTTTTTGCGGGCGCCATAACGGCGCTCGCAAAATCAATGGCTTATGGAGACGCGATAAAAAAGGGTATATTGAGGTGAATATGCCGAAAGCTATTTAAAAACATACGCTTGAGCGCATTATGCGCTA # Right flank : ACTGCCGCCTTTTTCTGCCCGGTATCTTTCCAAGAGTATTGCCCTCCTGGCCTTCAAGTCATCGCGCTAATCTAAATTAATCTGCTCTGCTGCCGATACTAACGTCACGATTACGCTATTGAGTCGCGCACTACTTATATTGAGCAGGCCTTTCGATGGAAAGTTTGGCGTCGGAAACATCACCCCAGATCGAAATTCACGATACCGAGCAGATCGCCAGCGTCGTGGAGGCACTGAGCTATCACACCCATGCGCTGTCGATCAGCGTAGAGGCGTCCTCGGTCTCCCGTCCGGTGACGCTGCGCGGGCTGGATCATGAGCGCCGGGTCCTGTCACTTTCCCTGCTCGATGCCCAGAGCCTTGATGCCGCCGAGCTGGTCAATCAGCCACTGACACTCAGCGCCGAAGGCGATACCGAGACGCTGCTTTTTGAGGGCATGGTGGCACTTGAGGTGGTGCGCAATAACGACCGCCTCGAGATACGCAGCTCGCTGCCAGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //