Array 1 66190-67668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYK010000011.1 Listeria booriae strain FSL L7-0232 NODE_11_length_112902_cov_49.048314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 66190 30 100.0 37 .............................. CGTCATTACAAAAAGCCGTCAATTCAAGTCGAAAAAG 66257 30 100.0 37 .............................. ACAATCAGCTTGTTTTTATCCACATATCGGGATTGGA 66324 30 100.0 37 .............................. TGACATACTGCGCTTTTAATCGTTTGACGCTATCGCA 66391 30 100.0 37 .............................. AACCACGCGTATCAATACACTGCGGCGGAGTATATCG 66458 30 100.0 35 .............................. CGTGTAATCAGCATTAAAATTCTCCTTCCTTCCAT 66523 30 100.0 36 .............................. GCAGATAAAATAGCTATTCAGGCATATAAACGAAGT 66589 30 100.0 36 .............................. CGGTTTCCGGGAAAATGTAATTCCTCTAGCATCCAT 66655 30 100.0 36 .............................. ATTTTATTGGCGTTTCGTGGAACACGGCACTGTGAA 66721 30 100.0 35 .............................. ATAAATGATATAAATGTTGATATGAGATACCCGCC 66786 30 100.0 36 .............................. ATATGTCGGTAACGCGGCTCCCGCGAGAGTATTTAC 66852 30 100.0 34 .............................. TCTGCATAGACATGATAAAAGGAAGCTCCTTCTA 66916 30 100.0 35 .............................. CTTGAATCCACCAATTTATTTCGGACATTTTCACT 66981 30 100.0 36 .............................. TGTATTCTTCTGCTGTTAGTAATTCGCGAAGTAGTT 67047 30 100.0 36 .............................. ATTTGATTCGTCTTTCGAGTCATTGGATATAGCCAT 67113 30 100.0 34 .............................. ACCTAACAAGCTTAATTGACTCCAAAGCCGCTCA 67177 30 100.0 36 .............................. CTATGATAGTAGTTAGCCATGCGGTAGAGGCGATAG 67243 30 100.0 36 .............................. TTGATAAGTTAGCCGATAAAGCGGCTGATAAATTGT 67309 30 100.0 36 .............................. AGATCCGTCAGTTGATATTACTACAGTGGGAAATGT 67375 30 100.0 36 .............................. GCGTTAGTAGTCGTGCCGAAGTGTGTAGACGAGTTT 67441 30 100.0 36 .............................. CTATTACCTTGCTAACTGATTCTGCTTCTCTTTCTG 67507 30 100.0 36 .............................. TTTGATGTCAAGCCGAGAGCAAGATAGGTTGTGGCA 67573 30 100.0 36 .............................. TAGTGTGCCAGTGCGCCACCTAAACTGTGCCCTGTA 67639 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.3 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGACGCGGATATCGTTCTAATCGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGATGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGTTTACGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGAATTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAATCACCATAGATAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATAACTATTAAAAACAGTACACTAACCATGAAAAAACCACTTGATACCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAACCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 70914-72122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYK010000011.1 Listeria booriae strain FSL L7-0232 NODE_11_length_112902_cov_49.048314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 70914 30 100.0 35 .............................. AAGGTGACATCGCAAAGGAATATACCGTTAAACGA 70979 30 100.0 35 .............................. GCACGTTTAGAACGAACATTCAAACCCTTCTTAAT 71044 30 100.0 36 .............................. CAAAGAATAGATCCGACTGAAGATTTCAGAAAAAAA 71110 30 100.0 36 .............................. AGTGATGAACATTGCAGCTAAAGAATACAAAGCGCA 71176 30 100.0 36 .............................. AGCTGTTCCTGTAAATTTGTGTTTTCCTGCTTCTAT 71242 30 100.0 38 .............................. TATATGGTACAGGGAAAGAAACGACATTACAAAAAGGT 71310 30 96.7 35 ....C......................... CTAAAAACAGGCTTTACAGCGGGGTCGTCTACGCC 71375 30 100.0 36 .............................. TTTCTTCACGCCCCTGTGATATAATAGATTTACGGA 71441 30 100.0 35 .............................. AAGTTGTTCCAACCATGAAAGCAATCGGGGACTTG 71506 30 100.0 34 .............................. CTTGATGAAAAAAATCTATCGGCAATCGGTCGCG 71570 30 100.0 36 .............................. TTTGGACTTTACGCATTCGGCATGTTTGTGTCTGTA 71636 30 100.0 36 .............................. GAAACATTTTTAGGGTATTCTTTCGCGTGCTGTATT 71702 30 100.0 35 .............................. TGTATCATTCTCCTTTTTCAATTTAATGTTCGAGC 71767 30 100.0 35 .............................. CCAATCCTATCCCATTACCGCCGCCTGCGAATTCC 71832 30 96.7 35 ...C.......................... TAGATTCCAAAGAGAAGGTTGATAATCTGATGAGC 71897 30 100.0 36 .............................. GATTTTTACCAGCAAGGGATAGGGATTTTAAAAAGA 71963 30 100.0 36 .............................. ACAAAGAAAAGAAGTGCTAAGAAAATGGCGTGAAAG 72029 30 93.3 35 .................A........G... GAGCGAATTTTATCGGGATTAGAGAGTGTTACTAG 72094 29 73.3 0 .G..............-.A.G...CC..CA | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 97.9 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGCGCTGGATAAAGAACGCCTCGTTCAGAAAACAACATTCGGTGCAAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGACAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGGTACTAAAAAGGTTAAGCCTGTTTTTGAGGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCC # Right flank : AAATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCTCATATGTTGAACATTTTTAGCATGCAATTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCCGTCGTGTTAAGAATGACCGTTTTCGCATAATATTTAATAGCTGGTGCAGTAACAGGAATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCTGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGCGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATATGATATTGTCCGTATTTTTTAAAATCACTCGTTTTGCATAATACTTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 57671-59269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYK010000019.1 Listeria booriae strain FSL L7-0232 NODE_19_length_60381_cov_52.656806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 57671 30 100.0 35 .............................. GAAGAAGATTTTGCAGAGAATATCGAAACTGATCA 57736 30 100.0 35 .............................. TTTCATGGCTTGTTTCTCTGCTTCTTTTGCCACTG 57801 30 100.0 36 .............................. ACACAATCTAGTGCTAAACTACCAGCATGAGAAAAA 57867 30 100.0 36 .............................. TAACTACGTTGAAACTCGTATGCACCAAAGAAATGC 57933 30 100.0 34 .............................. AGCGGACGTGTTTATCGCGATACGGCTAATTTCA 57997 30 100.0 37 .............................. TCACTTTTCTCAAATCTTTATTTTGACACGCGATTTT 58064 30 100.0 35 .............................. TTCACTTCGGCGGCATTGAAGCCATGTTGATTCAA 58129 30 100.0 36 .............................. ATGATTTAGAGCTATTAGCTACACAAGAGCGAATCA 58195 30 100.0 35 .............................. ATTTGTAACGAATAGTCGTTGAGCTCATCTAATGT 58260 30 100.0 34 .............................. AAAACTGGATTCTTCTTAGTTGATTTTGATTTTA 58324 30 100.0 36 .............................. TATAGTTCAAAATATTGTACCATAAAAAAGGTGGAG 58390 30 100.0 34 .............................. CACCTCAATCGGTTTCATGTTCGCGCTCCTCTCC 58454 30 100.0 36 .............................. GAGCTTTATGCGGAGCTAATGTATATTGACTTCTGC 58520 30 100.0 35 .............................. GCAGAAGGCTACGCAGGTCGGGACAGCGTTATTTG 58585 30 100.0 36 .............................. TCCTATCAGATGACTATGCACAGGTCTGCGCCGACA 58651 30 100.0 36 .............................. CGAAAGGGGCTGTAATGAGCGGTAAGGACGTATCAA 58717 30 100.0 36 .............................. ATCAGTGTTAGTTCTGGCGTTTCTATGATGAAATCG 58783 30 100.0 35 .............................. ACAATAACCAATCGTGGTTAGCGATAATTGTCTCA 58848 30 100.0 36 .............................. AACGAACGACAATCGGTACTACGCTGGATGAACATG 58914 30 100.0 35 .............................. TTGGAACACGGATATATAAATAACCTGCTTTCACA 58979 30 100.0 35 .............................. TCCTTACAACAGGTTATAAACAGTCTTCCGAGTAA 59044 30 100.0 35 .............................. TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 59109 30 96.7 36 .............C................ TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 59175 30 93.3 35 ........T........A............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG T [59191] 59241 29 83.3 0 .................A..-...C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 98.9 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAGATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CTAGATGGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCAAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTATTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCCATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCCGAAGAGAGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 273068-271861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYK010000002.1 Listeria booriae strain FSL L7-0232 NODE_2_length_478103_cov_55.583429, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 273067 30 100.0 35 .............................. TCACTAACACCTTATATGCAATCTGAATCTTCTCT 273002 30 100.0 36 .............................. CGCGTTAAGAAAAATGGCTGGGCTAAGCAAATGGGC 272936 30 100.0 36 .............................. AACTACATTCCTTTGGCTGTTTTTATCACTTCTATT 272870 30 100.0 35 .............................. TGATGTGTGATGAGGATACCATTCTTGTTCACGAA 272805 30 100.0 35 .............................. TTCAATAACTCCGATAACAACGATGGTTGATACAT 272740 30 100.0 37 .............................. ATGACGGTAATGATTGTGACAATAATTGTAGTGTTCC 272673 30 100.0 34 .............................. TACGTTCTTTAAAGCTTTTCCGCGCACTCTCTAC 272609 30 100.0 35 .............................. TCGAAAACGATGTGGAAAGAGAAGTACGAGGTATT 272544 30 100.0 35 .............................. GATATTGTACTGTGCAAAAATTTCACTCGTCGGCT 272479 30 100.0 34 .............................. TGGGTAAGGTTACAGACGAACAGCTAGGCTTGTT 272415 30 100.0 35 .............................. GATACTGACTCCACTGTTGGCGAAAGGTCTCTAAT 272350 30 100.0 36 .............................. CACATTAAATCGTTTGTCAAATACCTTTTTAGTACT 272284 30 100.0 36 .............................. CAAGTCCAGTAGCGTATTTGGTGCTGGAGTTCCTGT 272218 30 100.0 36 .............................. TGTCGTCTGCCCTTAACTCGGGTGGTAAAGTTTCTG 272152 30 100.0 36 .............................. AATTGAATAAGCCGCCTAGCACGATACGAAAATGGA 272086 30 100.0 36 .............................. TCTTTTCGAAGCCGTATTTCGTTGACACCGCTTTGT 272020 30 100.0 34 .............................. TTACAATATGGTGGAACTAATGCGTTTTCTAATT 271956 30 96.7 36 .................G............ AAGGACAAAGGCCAAACGGTACACTTTACAAACCCG 271890 30 80.0 0 A......C.C.....C.......CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 98.8 35 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGTCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACGCTACTTTCCAGCTCTCATAAAAAAGCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCGCGTTGCAGCAATTCCTGTGCTGTCGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTTCCTAGAATGGTTGTCATCTTCTCGGCCACTTCATAATACGTCAATGCTTCTTTTCCAGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 404804-405038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYK010000002.1 Listeria booriae strain FSL L7-0232 NODE_2_length_478103_cov_55.583429, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 404804 36 100.0 30 .................................... AGATTACACATTAAAAGCATTTGAAAAAGA 404870 36 100.0 30 .................................... TGGGAGAGGCACATAATGCGCCTTGGCGAT 404936 36 100.0 30 .................................... AGTTCATGAGCTACTTCGCAAAATGGTACA 405002 36 86.1 0 ..........................TG.A..C..A | A [405031] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAGTACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACAATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAAATGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGCGTCATCCCAATAATAGATACCTTCGAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTCCCCAGTATTCACACCATATAACACAT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //