Array 1 1001-1810 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEER01000011.1 Enterobacter kobei strain ECC3380 ECC3380_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1001 28 100.0 32 ............................ TAAGTGAGCGAGAGTAGGCCAGTAGAAATCAT 1061 28 100.0 32 ............................ GGAGAGGAGCTTATCGTAATAACGCGGAGGAC 1121 28 100.0 32 ............................ ATAACCAACCTCGCAAATAGAATAGAGCGCAA 1181 28 100.0 32 ............................ GCTGTGAGTTTTGGTGTCACCTGGCACAGTTA 1241 28 100.0 32 ............................ GGCATCGGCCGCGCACACTTCAAATCGAAGAA 1301 28 100.0 32 ............................ TGCTGCGGTGCTGCTGCTAGCATGGCCACAAC 1361 28 100.0 33 ............................ GTGGAAGCGCGTGAAAAATTACGCTACAGACTT 1422 28 100.0 32 ............................ TCAGACCGAACAAAGAGACGCTGCGCACGTTT 1482 28 100.0 32 ............................ GACGTCATCACATACGCGGCCCACGTCACATC 1542 28 100.0 33 ............................ ACTTCGCGCAGGTGCCACGACTCCACGCCGATT 1603 28 100.0 32 ............................ ACCACTGCCCGCGACGTACACCCAGTGCGCCT 1663 28 100.0 32 ............................ AGTACGGGGCGAATATGTCAGAGTTCGCCCGC 1723 28 100.0 32 ............................ TCTACAGGACAAAACTGAATTACCAGCAGTCT 1783 28 75.0 0 .....................ACCTCTC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCTCAAACGCAGCCCGTATGCCGTTGCCTTGGTGCATACCTGGAAGAAATGAAAACCGGCCTCACAGAATCAATGCGTGACTTTCAGGTGGTGGAATTTGACAACGAAGCCGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGAGACAGAAACGAAATGCGACTACTGCCGGGCATTAAACCATGTGCTGCTGGTATCGCATTTTGACCGCGATATGTTGCCGCACCTGACGGGATTACTGCATGACATCACACATTCAATGGCGGCAGATGTGGTATCTCCTCATGATGCTGGAACGGGAAATTCTGTTATTTCTTGAGTGGAGTGCGCACCGCCAAGGGATGTCCCCTGGCGACAACGGAGAAACCCTTTTTTTGAGATGCTTTATAACTCATTGATTTATAATGTTTGCTTTTACGTTGCAGAAAAAAGGGTTTAGCATGGTAACGTTGCTTAGTTGCCTTAATAACAATAAGATAGCGCTGTTTTCTTCCA # Right flank : CAAACCAACCCACTATAATATTCACCAAACCTATTTAAAACCTTATACCATTCAATCTGCACTCTCTGCTTCCACAATAAATAAAAAACCTATTCACGCATAAATTATATTCCATTGAATATATTATTCGTAAAAATAATATATTGTCATGAAAACATGATTTTCCACTTTATTACCACGATGATTATTATTCATTTGATGTCCGTCACATTTGTTTTCATTCGTTCTTCGCTAACATACTGCACATTCAACACCTTGAAATCAAAGCCCTTGCCATGTCCGTAAACAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTACCTGGAAAAATGTCGCATTCAAGTGAATGGTGGCCGTGTTGAATATGTTACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCTATCGCTAATACTACGGCGGTAATGCTGGGAATGGGAACCTCTGTTACACAAATGGCAATGCGGGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11628-12979 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEER01000011.1 Enterobacter kobei strain ECC3380 ECC3380_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11628 28 100.0 33 ............................ CAGTAGAAATCATAGCGGGTCTGCCTGCTGAAC 11689 28 100.0 32 ............................ TCAGCAGCAGACACCAGATCTCTCTCCCATTT 11749 28 100.0 33 ............................ CTGCGTAGCCTGGTAATTAGTACGAAGAGCATT 11810 28 100.0 32 ............................ TGTTGTTGAATAAACGCAAATACATCTGCTTC 11870 28 100.0 32 ............................ AACCGAAAAAGAAGTTACAGCCGCGCAACGTC 11930 28 100.0 32 ............................ GGGTTATACCGTCACGCGGCCAACCGAAAAAG 11990 28 100.0 32 ............................ GCGAGAGACAACCTTGTCGTAATTAACAATGT 12050 28 100.0 32 ............................ AAAGACGTCCAAGTCAACTGGATCACCGTTAC 12110 28 100.0 32 ............................ CACAAGGAAGATGATTAATGCAAATCAAACAC 12170 28 100.0 32 ............................ TCAACCCCAAATGTTGAGCGGCGCACCCCAGC 12230 28 100.0 32 ............................ ATGGAGTCAAACCGCAGGCGCCAGGCTGAGAT 12290 28 100.0 32 ............................ AAAATCACCGAAGTGGCGATCACTTCCGTTCT 12350 28 100.0 32 ............................ CTCGAGCATTTCGATAACTTCGCGGCGCTTGT 12410 28 100.0 33 ............................ CTCTTTGACTGGCTGAATACTCATCATTGCGCT 12471 28 100.0 32 ............................ TTTTTTGACACCCTACGCAGATTGCGAAGAAC 12531 28 96.4 32 ........T................... CGCCCGAGGTGATATCAATATATTTGCTAAAG 12591 28 100.0 32 ............................ GAAGGCGGAACGCTCGTTCGCAAACATCTCAC 12651 28 100.0 32 ............................ GCAGGTCACTAATCTGGGCGATATGACGCAGA 12711 28 100.0 32 ............................ TGAAAACTTTTGTCAGTTAGACCGTTTATGGA 12771 28 100.0 32 ............................ TTGTAAGTCGCTCACTATCCAGCGCCGCGAAC 12831 28 100.0 32 ............................ CGCATCAATACGCGCGGCGATCTGCGTCATAT 12891 28 100.0 32 ............................ AGTGATGGGGGATATTACGGCAAAGCCGTAAT 12951 28 92.9 0 .........A.....C............ | C [12976] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCCACGCGCTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGCTCATTAATTCCAGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGAATATTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAGCCGCATACCTCTGTTTGCTGGTAAACCGGCGTACCGCCAAAGCGCGTTATCAGCAGGTTTCTGCGCGGGGATCCATGTTCTCATGTTGCCTCCTGGGTGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCATAATGAATGGAATGGGTGTTTTTTAAGCAGGGTGGTTTATAAGAAGAAGGGCGTTTGACCCTAATTTTTAGTGCGTTTGTAATGCATTGATTTTAAATGGATATTTTGAGAGGGTAAAAAAGAGGGTAAAAGATGGGTTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGTGGGGATATTATTTGA # Right flank : AATAGAAAATAAGGACTCCCCTCCTTACTTTCTACACTGTCGAGCAGACAGCCCCGCGCTGAAACGAACCGCCAAATAATTGTTCAAATAATCAACAGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCGGCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //