Array 1 23733-24307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHA010000041.1 Enterocloster citroniae strain SL.3.11 PMKPKANN_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 23733 33 100.0 35 ................................. ATTTTAAGAACAAACATGTTAAAACTGACAAAAAA 23801 33 100.0 34 ................................. GCTAGAATATCTTTTAATATCCGATGTGACACTC 23868 33 100.0 34 ................................. CTGTTGCATTATCAATAAATATAGGTGGAGAAGG 23935 33 100.0 34 ................................. TGCTTTCATATCTCGTTCAATTAGTGTATTAATA 24002 33 100.0 34 ................................. TGCATCCGCGCTTATGCCTCCTATGACAATCCCA 24069 33 100.0 36 ................................. CATAATATCTTTACAAAATGAGAAATTATGGAGGAC 24138 33 100.0 34 ................................. TTTCAGGTAGTCAGCCTTGTTATTTACCTGCAAT 24205 33 100.0 35 ................................. CAGTTAATTTCAGAATGTTACCCAAATTATAAAGC 24273 33 87.9 0 ............A...AA.........A..... | GT [24297] ========== ====== ====== ====== ================================= ==================================== ================== 9 33 98.7 35 GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Left flank : ACTCACTCGTGAGCGGAAGCCCGACCATACAGGATGGGAAGCTGGCCGGGGCGGTGACCCATGTGTTTGTGCAGGATGCCAGCCGGGGGTATGGGATTTTGATTGAGAATATGTTGGAGCATTGAGGGTGAGGGAGGATAGAGTGGGCATATAGGTGCTGTGATCCTGCGTTCTTGGCTCTTATAAGCCTTTGTCCACTCTATCTTATGGAGTAAAAATTTTTGGTGTTTAGACGAAGTAGTGAGCGGATAGAAGAAGAGATGTAAGGGGAGCAAGATTTTGAACCATAATTTTGGTATACAAATACTTGATAATGTAAGTTACTATATTGGTGCGAATGCCAAGTGCACATGAAAAGCATAGGAGATTCGCACTTGGTTTTTAAGAAAAATTTGAGAAAAGAGAATAATTAGATATCATGGGTTGTAAAATGATTAAGAGAGTTGTATGATTTGTATAGAATATGTCTTGTATAAAAAAGAAAATTAGACATATTTGCA # Right flank : TCCATTGTAATATTGATATCGCTGCGCCCTAAACGGTCAGCCCCAGCATAGGTTAATTCCAGCCGAATCAATTAAGTCATATAATATAAAAAATATTAAAACATCAGATGAAATCACTATTCTGATAAACCCGACTATCCTGTTTTTCCAGCGTACCGAATAAGTGATCGACATGCAAAAGAAATCAAAGAAATCAAATCACCCCAATACAAAAACCACATAGCCTCCCTCCGTTAATTATTCCAATACACCCATCTTCCCAAAATAACATCTCCAATTTTTCACAAAAAACAAAAACATCACTTCTACAATAAAGAAAACCAAACACACTCCCATTCCAATAACCCAAAAGTAATCACACGTTCAAACATCATATGCCTCAATTATCCATCACACTAAAAAGCATTCAACGATCATATACGGATCCTTCACCTATGTGGCAATGGAGCAAAAGAAATTTTTATTCAGAAGTGGCGCAGCCTGCCTCAGAATATCATATC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78397-77349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHA010000024.1 Enterocloster citroniae strain SL.3.11 PMKPKANN_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 78396 33 100.0 34 ................................. ACTAAAATGCTGGGCCAGGCAACGGCATAGGAGG 78329 33 100.0 34 ................................. ATGTATTTACTGCTGAATGAACGGTTGAAGTTCC 78262 33 100.0 35 ................................. TGCCCATTGATATACAGGTCTCCGGCATCACCCAC 78194 33 100.0 36 ................................. GAGTTATTGGGGTAAAAAAAATACACCCTGTCTACC 78125 33 100.0 33 ................................. CACCGGAATCCATCTATAGCTATCCATTGCCTC 78059 33 100.0 34 ................................. AACAACATTCGAGAATATAGTCTCTTCGATTGGC 77992 33 100.0 34 ................................. CTCTTTGTGTTTGTATGCTTAGAATATCATCCTC 77925 33 100.0 36 ................................. CCACAAATCCGCAATCTGTGAACCGAACGTTGTAAC 77856 33 100.0 34 ................................. CTGCCTTCTGGCCCTTGATTCCCGCATTAGCCAT 77789 33 100.0 34 ................................. ACTCCACTCCATCGCTACACTGTGCCACTGCCCA 77722 33 100.0 35 ................................. ATCCCAAAACTAGCAAACCTATGCGCTCAGCGACC 77654 33 100.0 34 ................................. TGAGCTGTCCTATTTTATAGAATTAAGATTTAGA 77587 33 100.0 36 ................................. GTATGGTTCTATTTTCAGGTATGTTATCCCTCGGAT 77518 33 100.0 34 ................................. TCCGCATATATGAGCGGAGAGAAACAAGTAATTA 77451 33 100.0 34 ................................. TCTGCGCATGGCGGTTATAAGTCCACCCATGCCT 77384 33 90.9 0 ..............A.........C....C... | G,A,G [77351,77355,77357] ========== ====== ====== ====== ================================= ==================================== ================== 16 33 99.4 35 GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Left flank : GTCCATATTCTGTAGGGAAGGTTAATGCTTATATCAATTCCTTGAAAGACTTGTTTTCTGAAACTTTAATTTGGACCTTATCTATCATTACGGAAACGAGAAGAACATTAAAACATAAAGATAGTGAAGAAATCAAAATTGTGGAAAACGATAAGCTGGAGAATTATCATTTAAGTGATCTTGATATCAGAAATTTTAAAAAATCTCTTTGCTCTCCTTAGCGGTTCAATTGTTAAGTGTATGTTTACATATTATGGGATTGGAATAAATATTGCTTTGGGGTACAAAACTGAAAGTTTGGATTAAATATTATCAGAAAAAGGGAATACAAGTATTATGGTGCGAATCCCAAGCAAACATAAAATGTCTAGGAGATTCGCACCAAAATAAAGCACATAATATTTGATTTCGAGAGAAGATGTAGTATAATATGAAAAGAGATTTGTGCATTGTGTATGAGGGTAAGTTGTATTTAATAGTAAATATCATGCATAATTGCA # Right flank : TTGAACTTGGTAATTTTTCAATTACGATCATACCAAAGGAAAAATGTCGGGGTGTATGAATTAATTTCATATACCTCGACATTTATTATAGAATCATCTTATCAATTTGAAAGTCACAAAAATCGAAATCCCCTCAGAACGCTCCATCACACTTCCTGTCTAAACATCACCCGCGAAGCGTGGGCTCCGCCCCGGTGGATCCTGTTGTGGGCTGTTTTGATCGTCACACTGTTAAAGCCATCTCTGGTGTTCCGGTTTGGAAAGATAAAATTTTTTGCACTGGAGGTTATTGTGACTCTCAGGCAATGACCTTTGCAAAAGGTGTGGGACAGTTTGGTAGTACGGATTTTAACAGGGTAGATCTGTCCCGGTTCCATAAAGTCCGGGTGTTCAAACTGGTTACGGTACCGTACGCTGAGGACACCGTCTGCCAGTTTCATGGAACGTCCCTCCCTATCCACATCCGTGATGCGCACGACCAGATCCGTATCCTCACAGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5535-6955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHA010000002.1 Enterocloster citroniae strain SL.3.11 PMKPKANN_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 5535 32 100.0 34 ................................ TTCTTGATAAGATAGTAAACAGCAGCGAAACGAA 5601 32 100.0 34 ................................ TGCTATCATCTCGGCCTCATGGAGGGTCATTGAT 5667 32 100.0 36 ................................ TTCAGTGTACTGTTCCACTCTGGACTTGGCGCGCGT 5735 32 100.0 35 ................................ ACAGGAAGGTTTATTGCAAATGCGCAGCCGGACTT 5802 32 100.0 33 ................................ ATCGAGGCAGAGTCCGAAGCCGAGATGTACCAG 5867 32 100.0 35 ................................ CTTTGGACTTTTGACAAACCCAGCAAAGTCTTCCG 5934 32 100.0 34 ................................ TCTGATACCTTATATTTACCATTCATTATAACTT 6000 32 100.0 33 ................................ CTTCAAGTTCAAGGATTGTTCGGTTTGAGAAAT 6065 32 100.0 34 ................................ GCAAACTCTTTGGTGGAATCTTTTGGGTCTGCGG 6131 32 100.0 34 ................................ AGAATTATAAGGATATGTGCACTAGTATTGATGA 6197 32 100.0 34 ................................ TATTATGCGTTCCATAGTTGGACGTTTCCTGCTT 6263 32 100.0 35 ................................ GATATGCACGTCACGTACATTTTCTGTCAGGTCAA 6330 32 100.0 33 ................................ TTAAGTGCGGCCGCTTGTCCCGTTGTTACATAT 6395 32 100.0 35 ................................ ATGCTCAAGGTTGCCGAGAGTCCCAAGAAGCTGCA 6462 32 100.0 34 ................................ ATATTTTCCCTTAAAGTGTTACTTTTGCGTTTTT 6528 32 100.0 35 ................................ ATCTCAATAGTTAATTCAATCCAAAATATAGCTTG 6595 32 100.0 35 ................................ CCCTTGAACCATCTTTCTTCAGCCTACCCAGGCAT 6662 32 100.0 34 ................................ CAGTCACCATTTTCACAAATGTTGCAGGAAATGG 6728 32 96.9 35 .G.............................. CAGAATGATAAAGAATGGGAAGACATGCAAATCAG 6795 32 87.5 33 ..............A.C....CA......... CCCTTGACATTACGCCCAAATACGCATATAATA 6860 31 90.6 34 A.T...-......................... AAAACTGATCGGGGGAGACTTGTCTACGGCGTTG 6925 31 84.4 0 ......-.............A...G..A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 98.2 34 GTCGTTCCCCCTGCGGGAACGTGGATTGAAAT # Left flank : TGCATATCCGCCATTTTTGTGGAAGTGAGGTCAGAGTTTGCTGGTATTGATTACATATGATGTGAATACAGAGACCGCAGGAGGAAAAGCGAGACTTAGAAAGGTCGCCAAGCAATGCGTTAACTACGGGCGGAGAGTTCAGAATTCGGTATTTGAGTGTATCCTGGACAATGCGCAGTGTGTGATGCTGAAGTCATTATTGATTGAAATTATTGATGAAGAGGTCGACAGCCTGAGATTCTATTATTTGGGAAATAAGTATAAAACAAAAGTAGAGCATGTGGGGGGTGATAAGGGGATTTCGGCAGATGAGACATTATTTTTGTAGTGCGAATGTGAAGCACACATGAAAAGTACAGGGGATTCGCACCGGAAAAATTGCACAAAAGGTGCTTGATTCGGGAGGGAGAGGCGATGATTTTGCTGTGTGGTATTCAAAGGAATGTATAGATGATATAAAAGTGTGATTGTTTTGTGTTATGATATTGGATATATTTGCG # Right flank : TTGTAATATGACATCTATAAAAAGGTATATGGAAGATATTGATAGAGAAAGATATTAATAAAGAAAGATGTAAATAAAGAAGTATCTTTGCAAAGGGACACCTCAAAAAGCGGGGAGTACAATATTTTCGGCCTAAGAATATCCTTGACAGATTGGAGACAGCAGTATTCGTCTGTTTGAAGTCATCTAAGATGATAAAATATGCAGCGATTATGGTATTTGGAGGAAAAATGGAACAGTTATCTATATTTGAGTGTATAAATGGAACAGAAGAAAATGGAACCCTTTCCACGGATGAATTGGCTGCAATTCATCCACGGATGGTTTCGTTATTTAGCGGTTGCGGCGGATTGGATTGGGGATTTAAAGAGGCTGGATATGATATTGTTTATGCAAATGATTTTGATAAGGATGCACAGAGAGTGTATGAGGCAAATTTTGGCGAGATGGACGAAAGAAGTATCCTCGATGTACCGGCAGAGGAAGTGCCGGACTGCGAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCCTGCGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA //