Array 1 421208-418425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXES010000007.1 Bifidobacterium pseudocatenulatum strain YIT12228 YIT12228_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 421207 36 100.0 38 .................................... CGCCGTCTTGCTGCTTCTATGGGGTCATCGGCTGCGAC 421133 36 100.0 35 .................................... GTTCCATAAATAGTTCCTCCGCTCCACCGAAACAA 421062 36 100.0 36 .................................... TCGATGGGCATTCCGCAGAGCCAGCAGACTGCATGT 420990 36 100.0 36 .................................... CCGTCCGACCCGATGTAGGAGTCCGTCTGCACTATC 420918 36 100.0 37 .................................... CGCTCGTGACTTTCGTGATCCAGTCCGGCACGTGGAC 420845 36 100.0 38 .................................... TGGCTATCGTGCCGTCGCTCACGGATCCACCGCCGCTG 420771 36 100.0 36 .................................... TCCGCTGAAAATCGTTGTTCTGCCGGCTCCAGCGTG 420699 36 100.0 36 .................................... ATGAGTCGCGGACGTTACGAAGTGTTCGAAAAAATC 420627 36 100.0 35 .................................... GGTGAGCACGAGTGGCCGTCCTATATGAGTCGCGG 420556 36 100.0 37 .................................... CAGCGGCTTGCGCTGACTCCCGGCAAACATTCGATAA 420483 36 100.0 35 .................................... GCGAGCACCAGAGCGGCCTCCTTGGGTTTCAGCAT 420412 36 100.0 35 .................................... TCCAAGAGGCCGCTCACGAGCCGACCGACGAGGAA 420341 36 100.0 36 .................................... TAGTCGAGCATCTGCGGACTGCTCCACCCGCCTGCG 420269 36 100.0 35 .................................... GCCACCACCGCAAGCCAAACGGACTCTACCGGAAA 420198 36 100.0 37 .................................... ACGGTCGTCTTGTGCGATGGCGTCTGGCGTCGCGCGC 420125 36 100.0 37 .................................... GCCGGTGGCGGCGGCGGAGATCAGGGAGGCACGGGCG 420052 36 100.0 39 .................................... TGGAATGGTGTCGGCTGGTGACCAGCGGTATGCTGGCGG 419977 36 100.0 35 .................................... TTATAGCGTTCCGGTAGGCGGAACATGTTGCGAAA 419906 36 100.0 34 .................................... CTAAAAGTGGCGTGCGTGCAATGTCGATAGCGTC 419836 36 100.0 35 .................................... AACAACAATGTGAGCACGGCAAACCAACAATTGGC 419765 36 100.0 38 .................................... TCGACCCATGAGGTGCCGGCTAACCGGCGCGTCGATGT 419691 36 100.0 37 .................................... GGCCGTGAGCGCTGCGATGAGCGTGATGACCAGCATG 419618 36 100.0 35 .................................... AGGATCACCGTGACGATCAGCAACAACTCCACCTG 419547 36 100.0 36 .................................... ATGGCGCAGAAATACGGATGCCTCGACCAAGAGACA 419475 36 100.0 38 .................................... CGGCACGGAAGACAGGACGGGACACGTCAGGCGATCGG 419401 36 100.0 37 .................................... GTGGCGTTTTCGGTGGCGTCAAGTCAGTCGCGTCCGA 419328 36 100.0 37 .................................... TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 419255 36 100.0 38 .................................... GATAGGCAATGTTTCCATCAAAATTATATCATGCGGCG 419181 36 100.0 36 .................................... GCTAAGACTGGCGAGGAAGTCGTGGAAGACTGCAAG 419109 36 100.0 37 .................................... CCGACCAGCCGGGAAGCCGTCCAGCAGACGAATACTG 419036 36 100.0 36 .................................... CAGCCGCAGCTGGCCGCAGCCGTCAAGGGCGTGACC 418964 36 97.2 36 ...................................G CTGGTCTGCACGAAGGAACTGTGCGACGAGATCGTA 418892 36 97.2 35 ...................................G GGAAAGCTATCCGGTCGTTTAATCGCCGATCAGAG 418821 36 100.0 37 .................................... CTCGACGGTGACAAGGTCGGCAGCGTCGTCAACGGAT 418748 36 100.0 36 .................................... GCGCGCGGCGGCAATCCGGAGACTGAAGCCAGGTTC 418676 36 100.0 36 .................................... GAGCTCGTCTTCCGGCGTCAGTGCTTGTTCGTTGCG 418604 36 100.0 36 .................................... GAGAGATAATAGTTGGCGAGCCACTGGCTCAGATAG 418532 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 418460 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================= ================== 39 36 99.7 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGTGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCACGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATCGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 115121-116562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXES010000017.1 Bifidobacterium pseudocatenulatum strain YIT12228 YIT12228_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 115121 36 100.0 29 .................................... TGTCGGCGGGGAGCCATTCGACGGTTTCG 115186 36 100.0 29 .................................... AGTCATGTCTAGCAACACGCTAAGCAAGA 115251 36 100.0 29 .................................... TGCGAAAACCTACGATATTTCGTGGTCTG 115316 36 100.0 29 .................................... AGCCGGTCAGGCATTTGTATACCGCGCGA 115381 36 100.0 28 .................................... TAACGATGAAGGCACCGGCAGTCCCGAA 115445 36 100.0 28 .................................... CGAGGTACCCAACGTTGCGAAACGCCTA 115509 36 100.0 28 .................................... TACGAGCTTCAGACGCTTTTCCTTCCTT 115573 36 100.0 28 .................................... TGGACGATGCCATCGAAATCACGGCTTC 115637 36 97.2 28 ....G............................... TACGTTCAACCATTCAACTGTGCGTTCC 115701 36 100.0 28 .................................... TGCACGGACGCATCAACCAACAAGCAAT 115765 36 100.0 28 .................................... CCTTTAGGAATCTGCTCCCGTTTTGGAG 115829 36 94.4 28 ...............C...........A........ TGACGCTGGGGCGGGCTTCCGACGTGCG 115893 36 97.2 29 ..............G..................... GAGTATCTTGCGCACCTATCCCACGCCTT 115958 36 91.7 27 ....G..A...................A........ AAGGGATGAGGGATGAGGGACAACATG 116021 36 88.9 29 ....G...T.....G............A........ TCTTCCGGGTTTCCATGGTCATTCCCTTG 116086 36 100.0 28 .................................... AGGAGGCTTGTATGGCATCTCGAAATCG 116150 36 100.0 29 .................................... TGAAATCCGTGGGAGCGTCCTCAATCGGG 116215 36 91.7 27 ..............TA...................T TGAGTATCACGGCGGCTGAAAACTAAA 116278 36 86.1 24 ..............GC.G.........A.......T CTGTCTCGGCCTTCTGCTCTGCCT 116338 36 88.9 28 ....G.........TA.........A.......... ACGTTTCCCGCTTAGTCATTTGGTGTCT 116402 36 88.9 24 ....G.....G...TA.................... TAGCGTCGTTCTGCATACTGAAGG A [116434] 116463 36 88.9 29 ..A....A......TA.................... ATTTCGCCATCGTACAATCGGTAAACTCG 116528 35 80.6 0 .T..G.......-.G............A......AA | ========== ====== ====== ====== ==================================== ============================= ================== 23 36 95.4 28 AGTAAAAGGAAGTAATAATACGGCAGTCTTCCAATC # Left flank : ATCCAAAAGGACCGACCATCCCCTCATTGGTAGACGAGTTCTGCGGACAATACGCGCAATACTGCGAAGGCTGGCTAGACAAACTAACCGTCCCAATTTTCGGAAAAAAGGGATAAGAAATGAAAAGAGATAAGGATAACGGCATGTGGACGCTGGTCATGTACGACCTACCCATTACAACGAGAGAGGACGCTGGAGCCGCGAACAGATTCACCAACTTGTTGGCTGATTTAGGATTCGTTCGAGTGCAATACTCGGTCTACGCGAGATACACTCCCACCCAATCAGGTGGCAGGTCTGCCCTTAACTACATCAAGGCGGGCATACCCCCTCACGGAAACGTGAGAGTGCTTTGCGTAACGGACATCCAATGGGCTAATTCTTTAAAATTTATCGACAAAAAACAGCAGAAGACGGACGAGCAACCGGGTCTGTTGACTCTTTTCGACGACGACGAATAGCAAAAAAACGTTGATATGAAGCGGTTTTCAGCTTCCTAT # Right flank : AAAGAATAAGCCGGTGTTTCGCCACTCCCACCGGCGAGGAGCTGTTCACACAAAGACGCGGAGTAGGAGAAGGGTGGAGAGAAAAACACCCGTAGACTCCGCTTTTTGTTTGGCGTTTGACATGGCTTGGTTGTTTCCCATCAGTGAGTTCATGTCGTGAACACTGGAATGGTATGCGTGTGTAAGGGGTGCAAGGCATACCGGCTTGCTGACAGTCCTTCATGGATTTCCGGACTATCATCCATCGCGCATGTAAGGGGTCATGCCATGGATTGTCCTATCAGATGAGGGTTTGAGGATAGGACTTTGTGCGGAAGACGAGATTCGAACTCGCAATGACTGCTTGGAAGGCAGTCGTGATAGCCCTTTCACTACTTCCGCGAGGGGATGGGATTGACTGTGATTGCTTACTGGTAACACTGCATACACGGAGAAAAATGTTTACGACCATTCCAAACTATTATGGGATGGAAGGCTCGCAATCATAGTCTATCCCCAGC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAAAGGAAGTAATAATACGGCAGTCTTCCAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //