Array 1 742350-742604 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 742350 34 100.0 40 .................................. GCGGGTTGGACAGCGGTGATTAGCAACTTGAACCCAGGTT 742424 34 100.0 38 .................................. ACTCCAAACAATTCCACTTGGAGGTCTTTTATTGTGTT 742496 34 100.0 41 .................................. GTACGGCAGGGATAGCTGCAACTCACCGTTCTTTACCTGTT 742571 34 79.4 0 ................A.GTA..CA........T | ========== ====== ====== ====== ================================== ========================================= ================== 4 34 94.8 40 ACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : AAATGTCGATGACCGCCTCCTCCAATTGCTGTTCTTCCTCGTTCTCGATGGAATCGGGCTTGTAGTAATAGGTGCTTCGTGGGAGTTGTAGGACGTTGCACATTGCTGATACCGAGTATTTGTGAGCGTTATTACGAATCACATTTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTAAAATATCGTTTTCCATCTTCAGTCGCTGATTTTCTTTCCGTAACGCGATAAGCTCATTTTCTTCAGGTGTTCGATTCGCTTTCTCCGTAAAGGAACCTGTGTTTTGGCTTTGAGAAATCCACCGATCTAGCGCTGATGCGGTGAGACCATACTCTTGGACGATGCTCGTCCTTGATTTTCCATTCTCGTATAGCTTCACCATTTGTTGCTTAAACTCCGCTGTAAACGTACGTCTTTGTTTTGGCATAATAGATCCGCTCCTTCATTTCTCTCTATTCTACTAGCCCTTATTTTTTCTGTCTAATTTAGTGTAGCCGATCC # Right flank : TGGCTGGCGCTTATCGTCGCGTCCGCACTCTTGTGTGGTTGCATTAAAGACCGAATAGTGCTGTTCCGACATGTAGATCATGAAAGCCACCGTTAAGTTGAGCTATGCTCATTAGAAGTCCTGAATGGAACGGCGGAGGAAAGGAATGCAGGGGAAAAGCCACTGCTTGATAACGGGCTGGCACTGATTGATGTTCACATGTGCTAAAGCAGGGCAGGGCTTCCAGCGTTGATGGAAGGCAGTTCTAAGAGTAAGGCAAGTTGATTTCCAACAGTGGTGTTGAGAAGATAGACACTAAAAAAGGCACGGAATTGATCACCCGTGCTTTCCAAAAGATGCGATTTGATGAATAAAGTAACGCTCAATGCTAACTCCTATGCTTATTCTTTGGCACAGAGGTACTTCCTCTTCCGCCTAAACGAAATATTTGAAGTGAAGATCACTGTATAATAGGCAAAAGTAAATGCCGTCTGGGTGAAAATAAAAAACGAAAGCAGCAT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 743477-743960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 743477 37 100.0 36 ..................................... TTGACAAAATTCATACAAATCCGATTCTGACATGCC 743550 37 100.0 37 ..................................... ATAAAACGGTGGAGCTGCCGAATGGTTACGCGATTGC 743624 37 100.0 37 ..................................... GTGATTTCACTTTGTAGGAGGGGAGTTTTCATCGAAA 743698 37 100.0 40 ..................................... CTGCTGTGATCATCACAACTCCCAAATTTGTCAGCATGCA 743775 37 100.0 38 ..................................... ACACAACATACGACAAGGACATAACCACCGTCTTGCCT 743850 37 100.0 37 ..................................... TGGCAAACACTTCTGCGATTGTCAGGTTATCAGTCAC 743924 37 91.9 0 ......................C....A.......G. | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 98.8 38 GTTACATCGAAGACCCGAAAAGTTAGGGGACTGAAAC # Left flank : CCTATGCTTATTCTTTGGCACAGAGGTACTTCCTCTTCCGCCTAAACGAAATATTTGAAGTGAAGATCACTGTATAATAGGCAAAAGTAAATGCCGTCTGGGTGAAAATAAAAAACGAAAGCAGCATGAAATCGATTTGGGATTCATGTTATGTTCTGAAAGCTTAAACAGTAAGTTGGATTGCTCCCCATGAAGAAATTTGGAGCGTTCAAGTGGCGGTTGAAGTTATTTTATGTAGTGGATGAAAAAGGCTTTTTGGATGCTAGACCGTTTAAAGAAATGTATAGATGAGATGGAGGATAATGTTTTATTATAAACATGAGAGCGAATGGTTACTCTTTAGCGGGGAAAAATAAACAAGATGAGCACAACGTGATTTTCGAGGATCGGACGTGATTTTTGACAGAAAATGAATCCTCGAAAAAAGAGTGGTTTCTTGTTGGCGTTGAGTATGAGGAAAGCCTTGTCACGACTGGGGTTCAGCATGCCAGTCGAAGTCG # Right flank : CTTCCAGCAAGCCAGTCATGATGCTTGTCCTTGACGGCGTTACATCGAGAAGAGAGCGTAAAAAGTTTTGTGTAAATGGTTAAACTTCCCATTAAGGAGATGATCATTTATGCAAGACAAGAGAGACATGACCATCAAGGAGTTAGCGAAGGATTGCCGAACCATCGAGGACGTGCACATCATGCTAAAAGATTTGTTCCGTGACACCATCCAGCAGTTGTTTGAAGCAGAAATGGATGACCATTTGGGCTATGCCAAACATAGTGCCGATGGTGATCATTCAGGAAATAGTCGGAATGGGTATAGCAAAAAGACGCTGAAAACAAAGTTCGGCAATACAGAAATTCGTGTCCCCCGTGATCGCAACGGCGAATTTGAACCTCACATTGTGAAGAAGCATGAAACAACCACAAATGGCTTGGAGGAGCAAATCATCGCACTCTACGCCAAAGGTATGTCTACTCGCGATATTGAAGAACACATGAAGGATCTGTATGGGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCGAAGACCCGAAAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1075419-1074429 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1075418 36 86.1 44 ......T..CAA.....C.................. TGCTCAACTGCTGTACATCCACTCACACGGCATTCGGCAGCAGG 1075338 36 91.7 37 .......T.C.A........................ GATTCGAACTCATTTACCTCATCTTCTATTCCGCTAA 1075265 36 97.2 35 .......T............................ GGAACTCGTTCAGTTTGTTCTTTGTACCTTTCTCG 1075194 36 97.2 37 .........C.......................... CGAACCATCCGGTAAGTATCAAACAGTTGTAAGCTAT 1075121 36 94.4 35 .........C.......C.................. GATGATTAAGCGGCGATGGAACAACTATTATGCCA 1075050 36 100.0 36 .................................... TTGGCTTGAAATATGGTAAGTCATCGACACACCTTT 1074978 36 100.0 40 .................................... AATTGATAAGCAAATTGAAAGCTCTTAATCCTAGGAGGTA 1074902 36 100.0 37 .................................... TCGAAGAAGAAGAAAAGAAAGGAGCCCGCCACCATGC 1074829 36 100.0 35 .................................... TGATTTTCGGAACAAATAAATGATCCAGGGAGCCA 1074758 36 100.0 39 .................................... TTTTTAACGGTTTGCCATACGCTCTGCGTGCCATCTTTC 1074683 36 100.0 38 .................................... AGCAGCAACGCCAGGAGAAATTCCAAGACGTTATCCAG 1074609 36 100.0 34 .................................... TGCGGCCTAACAATATAGGCAAATGGGGATACAT 1074539 36 100.0 39 .................................... AGCATTCCTCCAGATATTTAACAAATCGTGTGCTTTGTT 1074464 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 14 36 97.6 37 GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : AAGATCGTAGAAGATCCTGCAAGATAAAAATGGCTTTACCCGAAATCTCATAGTAAAATATGGGCAAGTACATTAGACACGGCTCTCAAGGGTGGTCGGCTCATCTCCCATGTCGGAAGCGAGGGGAGGTGGGAACGTGGCAATTACTCACGAAATGCTTACACTTATGCTCCAGTTCGGCGGCTTTATCGTTGGGCTGTTGAGTCTCGTTGTAACAATCGTTGTTGCCCTGACCAAAAGAAATGACCGCCCTTGAGATTGGCGTCCAAGGCGGTCATTCTGATCGACTATTAAGCTGAGCCGTCCCCTTGAGGGAACGTCTATTGTACTACCGGCAGAGTGCGGGAACACCCTGTCGGTTTTTATTTTGTCCACTTTTGGTTAAACATTAAACACTTCATGTTGAAAGTGTAACCTATCTTGCTTCCATCATAACACGTTTGACATGTCGGCGTAAATAAATAAGCGACCCCACATGTCTTTATAATCTCCTGGTTCAC # Right flank : TCCTGTCTTACCAATCCCTACAACCGCAAGCGTTCCCACACTCTCTTTCGAGCAGCCCATTTTCTCGGTTGTATTCTGCCTGATTTCACGGAGACTCCAGTCGTTCAAACTGACTTGGCGCTTACTCTCCCAACGTATGCGAGCATCCCCGGAGCTTTTTGGGCTGAGAGGATGCTCGCATCGTTGTTTTCGAAAGCTTAGTGGAAAGTCGAGATTATCCGTGGGAGTAGACTTGTGGAGGGTCTACATTTGCACACGCACGGAAATCGGCCTGTCGCCTTTAGCATGCGACCGATACATTCATTTTACATATTTTCCAAATACAGTTCAACTACTACCGCACTGGTAAACTCCTAGCATCAGCCATTTTCTCGCATCGGGGAAAAGCGCGGTCAAAATTTTGATCCCATCTTCCCTGCATCCTTCCGCCAAACCGCCGCATCCCCTTTTCCACTAAGAGGTATTGTACACCATTAGCGTGTCCTTACTTCGCCAAAGCA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 4 1076346-1077745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================= ================== 1076346 36 100.0 35 .................................... GCTTTGGAAAATCTATTATCAACTCAATCGACGTG 1076417 36 100.0 37 .................................... GCGGGGGTCGCCTTTTGGTTCGCCATGTTCGTTTGCC 1076490 36 100.0 36 .................................... CAAATAAGCGATAACGCGACCAAGGGTATGTGAAGA 1076562 36 100.0 41 .................................... CCGTACAGATCTTTGCAGACTCGCCCGGAACGATGATGGTG 1076639 36 100.0 38 .................................... CATAGAAAACATTGTTGCTGATGAGGATGAAACTTTTG 1076713 36 100.0 37 .................................... CATAACGATAATGGCGATACAATTCCACACCAGCTTG 1076786 36 100.0 39 .................................... GCGTCGGACGTAGCACTTCCGTTTGCCCATTTCTTTCCC 1076861 36 100.0 36 .................................... TCTGCATTTGTTAATTCTATTCTGTGCTCGATCTTG 1076933 36 100.0 37 .................................... TATGGAAAAACGAAATAGGGTGATTGCGTGTTTCAAG 1077006 36 100.0 36 .................................... AAAACATCATTCAGCACACTACACAGAAGTAGCCCG 1077078 36 100.0 36 .................................... AGGATACCGGGCGTTTCGGTGACACTCTTGCTCGCG 1077150 36 100.0 40 .................................... AACCCTCAAACTTTCGTGTACTGCTTCCTCTGCCTTTTTC 1077226 36 100.0 37 .................................... TCGTTCATCCTCTCTCGTTTGAAACGTGTTTTTCATT 1077299 36 100.0 36 .................................... TCCGCAAATACAAAAGAAGGTCGGTAAACAACGTCG 1077371 36 100.0 37 .................................... ACTGGGCATCCCCTTCGTTGCACAAAATATCATTCAT 1077444 36 100.0 34 .................................... TTGTAGAATAAACACTCACCTCGATCTGGTGTGT 1077514 36 100.0 34 .................................... TGGTCGAAGGTCGACGATCCGGCTAACAAACGAC 1077584 36 88.9 89 ...........C...A.........A..A....... CACGGGGATGGATGAAGCCAGCACCAAACGGCCAGTCCATTCGAAAATTTTGAAACAAGCACGTGCATATCTAAATACATCTTGCGGCT 1077709 36 69.4 0 C......TC.CC...A....A....AC.....T..G | C [1077739] ========== ====== ====== ====== ==================================== ========================================================================================= ================== 19 36 97.8 40 GTTCGAAAGCTTAGTGGAAAGCTTCGAGGTTAGCAC # Left flank : ATGTACTTGCCCATATTTTACTATGAGATTTCGGGTAAAGCCATTTTTATCTTGCAGGATCTTCTACGATCTTCCATGATCTTGTAAAATCACGATCCAATCTGTTTCAGACGATTATTTTTCTAACAAACTCCAGGGGTTCATATGGGGGGCGTGACATCATCATAGTTGAACTGTATTTGGAAAATATGTAAAATGAATGTATCGGTCGCATGCTAAAGGCAACAGACCGATTTCCGTGCGTGTGCAAATGTAGACCCTCCACAAGTCTACTCCCACGGATAATCTCGACTTTCCACTAAGCTTTCGAAAACAACGATGCGAGCATCCTCTCAGCCCAAAAAGCTCCGGGGATGCTCGCATACGTTGGGAGAGTAAGCGCAAAGCCAGTTTGGACGACCGGAGTCTCCGTGAAATCAGGCAGAATACAACCGAGAAAATGGGCTGCTCGAAAGAGAGTGCGGGAACGCTTGCGGTTGTAGGGATTGGTAAGACAGGAG # Right flank : GAACACAAGCCAATTCATCTAGAAACAGTGGAATTGGCTTTTTCCTATTACCCCAAAATATGAAAATGATTTACAATAAATAAAAATCATGCCCAACTCTTTTCAAAATCAAACCGGGAGGCACCAGCCATGGCAATCCGCAGTATAAAACTAAAGCTCAAAACCCGCACAGGCCCGGAAGCCCAAAACCTCCGAAAAGGAATATGGCGAACGCATCGGCTGTTAAACGAAGGCGTCGCTTATTATATGAAAATGCTCTTGCTCTTTCGTCAGGAGAGCACTGGCGGACAGACAAAAAAAGAACTGCAAGAAGAGCTGGTTCGTCATATTCGCGAACAGCAACAAAAAAATCGTGCAGATAAAAATACACAAGCGCTCCCATTGGACAAGGCGCTCGAAGCTCTGCGGCAACTATATGAACTGCTTGTTCCCTCCTCGATTGGGCAAAGTGGCGACGCCCAGATCATTAGCCGAAAATTCCTCAGCCCGCTAGTCGATCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAAAGCTTAGTGGAAAGCTTCGAGGTTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 1084817-1083541 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1084816 35 83.3 36 ..-..C..TTT..............G.......... TTCATAGTCATTGCTATGCCATATACCAGGACATCC G,C [1084810,1084816] 1084743 36 97.2 37 ................C................... CAATGCAACTACGAGCAGCAACACAGGCTCAAATCCC 1084670 36 100.0 38 .................................... CTAAGCCAGCAATAGCCTTTTTGGGCAAGGTTCCGATC 1084596 36 100.0 36 .................................... TGTAGCTTGGTAGGTCATGGTTACCGGCTGTCGTGT 1084524 36 100.0 35 .................................... AAGGTGCCGAAAAACGTTCCGGGTGCAGATGAAAT 1084453 36 100.0 36 .................................... TTCGTTGTTCGGATCAATGTTTTGTAATAACGTCGA 1084381 36 100.0 39 .................................... TATCCACACCCAGACTTCGTATTTTTTATTTTGGTATTG 1084306 36 100.0 37 .................................... GGAGAGGTTGAGAAAACAACATCATGGCGACCGAGTT 1084233 36 100.0 37 .................................... GGGTTATTCTCCTTTCGGGAGGGGGTTACCCTCCCTG 1084160 36 100.0 36 .................................... AAAATAGAAGTTTTGGCTTGCTGCTTTTTCATTCCC 1084088 36 100.0 37 .................................... TTGTCTACTTGGCCATCTACTTCGCGAATAGCCTAAT 1084015 36 100.0 38 .................................... CACTCCATTACCGGAAGATCTAAAAGGCGACCTTGAAC 1083941 36 100.0 36 .................................... ATGAGCAAGTCGTAGAGATAGTGGGCGGGCCAGGAG 1083869 36 100.0 36 .................................... TCTTCCTTCTTCTCCTCGCTCCAGGCATAATAAAGA 1083797 36 100.0 39 .................................... TCGAACATGAGCATATTCAAACAAAAAAACTTCACTTCC 1083722 36 100.0 37 .................................... GGTGAGCGCGTTGATGAGATCAGCTAGGGGATTGATT 1083649 36 100.0 37 .................................... GTTGGCATCAATTCCACAGTTACCCCCATAATGGACT 1083576 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 98.9 37 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : CCACCATCGGCATAATCTTGTCGGTTACTTTACTGACCATCGTAGGAGACACGTCGATCCCATACAGATCCTTCATGTGTTCTTCAATATCGCGAGTAGACATACCTTTGGCGTAGAGTGCGATGATTTGCTCCTCCAAGCCATTTGTGGTTGTTTCATGCTTCTTCACAATGTGAGGTTCAAATTCGCCGTTGCGATCACGGGGGACACGAATTTCTGTATTGCCGAACTTTGTTTTCAGCGTCTTTTTGCTATACCCATTCCGACTATTTCCTGAATGATCACCATCGGCACTATGTTTGGCATAGCCCAAATGGTCATCCATTTCTGCTTCAAACAACTGCTGGATGGTGTCACGGAACAAATCTTTTAGCATGATGTGCACGTCCTCGATGGTTCGGCAATCCTTCGCTAACTCCTTGATGGTCATGTCTCTCTTGTCTTGCATAAATGATCATCTCCTTAATGGGAAGTTTAACCATTTACACAAAACTTTTTAC # Right flank : TCCTTCCTTGCCGAAACCTACAACACCAAGGCTTGAGCAGGGCTTTTTCGAGCGCCAGGAATTTCAGTATCCCTTTCCCCGTCTATGCACTCATTTCCAATGCACAATCGTTCAAAAAAGCCTACTCTCACAAGGATTTCGAGCATCTCCAGTGATTTTTGAGCTGCGGGGATGCTCGAAAATCAAGCGCACATACTCAGTGGAACTTCGTGACTATTCGTGGTAGCCGCCCTGTAATGGAGGACGACAATGCACACGCACGAAATTAAAGCAAATCGACATACGGCCTCTAACCGTCGACTATCATCATTGTACTGTTTTCGCCTTGCCTCAACAACACACATCCACTTTCCTAGTAGATAAATTTAGTTAAGTCTCGCGGGAGGAACTCTCTTCCGACCGTGGCAATTCGCTTATCCAATTGGTCCTTGGTCACCGGGCCGATTTTTACAAACATGACCTGATCTTCTGCATGATGAATCAGCTCAGCCAGACTGACC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 6 1428075-1429226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1428075 32 100.0 33 ................................ TTAAGACATCTTAATGGATCAGCAGGTTACTAC 1428140 32 100.0 35 ................................ ATGTGGACAGCAATCTCGATCAGCGCGACTGATAT 1428207 32 100.0 34 ................................ TCCTCGTCAATTAGGGCGGCGGATATGGTTTTGA 1428273 32 100.0 33 ................................ AACGGTGTAGCGATATGACAGCCCGCTTGTTTC 1428338 32 100.0 34 ................................ CACATGGAGTAATCAAACAAAAGAGAAACATCTC 1428404 32 100.0 34 ................................ AAGTGTGATGCCGACTATGCTGGCATCGGTGGAT 1428470 32 100.0 35 ................................ TTGCACCAAAATCCGCATCATCTACCGCACGCACC 1428537 32 100.0 33 ................................ TGTCTCTTCGTAAGTAGCCTTGAGCCACTTTCC 1428602 32 100.0 33 ................................ CTCGATCGTCACGTTACTCGTATACACCGTCGG 1428667 32 100.0 34 ................................ CTTGGACCTCCCCGTACTCAGTGCCAAGATAGTA 1428733 32 100.0 34 ................................ TTTGCATATTCGATCTCGTTTCGCGTACTGCTGC 1428799 32 100.0 34 ................................ AGTGATACTTTCCGACTTACACCAGCCTTCTTCC 1428865 32 100.0 35 ................................ AGTTCCGATCAACGCAAGAAGTAAGGTCAACCAAC 1428932 32 100.0 33 ................................ AAGGAGGGCGTTAAATTTTGGTGAAGTTCCTGA 1428997 32 100.0 33 ................................ CTGAGAGGTCTCCTGTACTGTCTACGTCCCCTA 1429062 32 100.0 34 ................................ ATCACACAACTGCATACAGCGTCGAGTCTTGGCA 1429128 32 100.0 35 ................................ GGTCATGCCGTTCCCTCCTCTACAACCGCCTTCGC 1429195 30 84.4 0 .......................A.C..G.-- | TT [1429219] Deletion [1429225] ========== ====== ====== ====== ================================ =================================== ================== 18 32 99.1 34 GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Left flank : TTCTGGAAGTAGGAGTGATGTGGGATGATGGTGTTAATTACTTACGATGTGAATACAACCTCTGCTGATGGGCAAAGACGCTTGAGACAGGTTGCCAAAACATGCGAGGACTACGGTCAGCGAGTGCAAAATTCGGTGTTTGAATGTTTGATTGATTCGCAGCAGCTGAAGGAATTGCAGATTAAGCTGAAAAAGACTATAGATCCGGAGATGGACAGCTTGCGCTTCTATCGGATTGGGAGTAATTGGAAAGGTAAGGTTGAACATGTTGGCGCTAAACAAGGGTATGATCCAGAGGGGTTTTTGATGATTTAGCAGTGGATATGGCATTTGCGAACACTAGGCTCACATCGATTTTCAGGGAGGTTCGCAAATGCCTGCCGTTGCTGGGATTCGAGGTGTTTTTGGTATATGCTGCTGCGTATTATGCGACCGTATAAACGAGGTTCGCGGAAATCGCGTGAAATCCCTAGTCAGGACAAAGCTTCCTAGGTATTGCA # Right flank : AGAATTTGAGGACCTGTTTAGGGCAGTGACACCTGACTCTGGTGGAAGTCCGAACTGGTCAGATGTACTACCAAATACAGAGAAGTTAGCTCAGCTAGTAGACATAGGCCGGTAGTTTGATCTCAATAGTTCACCATTTAACTACGGAAACGGCAGTAATGCTGTTTTACATTTTGTTCATCGCCAATTTTTTGCTTGATCCTAGACTTTTCTGGAAAGTGTACCTGCTTTTTGGGATGGGAAGCTATGGTTGCTCTACATTAACACTCTACTGTATAGCAAAGATGGCTGCGATGCTACTAAGTAGCATATCAATAATGGTTTAGTCCTCGATGTATTGGCAGGAAAGAAGTAGAAGAGCAATTTTCGAATTCTAAATGTAAGATAGTTAATATACGCATTGATATGTATTTTTATTTCATCAACTAACAATCCCATTCTTATACGCCCTCCCAAGTGGGAAAAATCGAGATACCATCACATTATAGCTGCTTATGTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 7 4882556-4881703 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4882555 37 100.0 37 ..................................... TATACTTCACCTTTGACAATTACGCAGACCACGACAG 4882481 37 100.0 36 ..................................... AGGTAAGAAAAGAGCGTTCCGAAGGCGTTACCGAGG 4882408 37 100.0 37 ..................................... TTGTGATTGGAGATTACAAGGGAGGGAGGAACGAAGG 4882334 37 100.0 37 ..................................... TCATATGAAACCATCGCAAGAGCCGGAAGCATGAGCA 4882260 37 100.0 37 ..................................... CGAAATCATCCAATACAATCGACTTGCGCTTGGAAAC 4882186 37 100.0 36 ..................................... AACAATTGCGATAATGTCGAATTGATTGTTGATGAC 4882113 37 100.0 37 ..................................... TAGAACATTGATGGCTTCAACCATCCATTGATACGCA 4882039 37 100.0 37 ..................................... TCCGTCGTTTTGCGAATCTGCATGTCATAGGTGTGCA 4881965 37 100.0 38 ..................................... CTGCTCCACCGTGTCGATCGACATTAACAGAAAATTCA 4881890 37 100.0 38 ..................................... CCCACATTTCTGACTGGCTGACGTACCCACGGCAAGAA 4881815 37 91.9 38 .......T..........A...T.............. TCATCGCCTGGATAACGCTTCATTTTTTCCAGGATCTC 4881740 37 89.2 0 ..................A....A..C...A...... | T [4881708] ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 98.4 37 GTTACATCGAAGACCCGAGAAGCTAGGGGACTGAAAC # Left flank : GGTTAACGCCCATTCTTTGTCAGAAAGGCACTTCATTTTCCGACTCAACGAAAAAACTGAAACGAACATCCCCCCGTATATTTGTCAAAATGAAATAACGCCCTGATGAAAATAGAAAAAGAGAGCAGTATGAAAGACGATTTCACATTATGTTACGTTCTGAAAGCTTAAACAGTAAATTGGACTACTCTCCATGGGAATTTTGAAGCGTTCGAGTGGCGGTTGAAGTCGTTATTTTATGTTAGTGGATGAAAAAGTCTTTTTGGTGCTAAAGGAATGGATAGATGAGATGTGGGATAATGTTTTACAATAAGTATGAGAGCGAATGCTTACCCTTTAGCGGGGAAAAAATAAATGAACAAGATGCGTACAATGATTTTCGAGGATAGGGCGTGAGTTTTGACAAGAAATGAATCCTCGAAAAAAGAGCGGTTTCTTGCTAGTATTGAGTATGGGGAAAGCCTTGCTGTGACTAGGATTAAGTATGGTAGTCAAAGTCG # Right flank : TAAGGCTCTTGCATTTTTGTTCGTATTTGGTTATCTCGTTATATTACAAATCCGAAAAAACAGAAGACTGTAACTAAGCTGGCCTTGCCTGCTCGCGATGCTCCGACAACAAAAGATGCTAGAGAAAGTAGATTTGATGGAAAAGATGGAAAAACTTATAAAAGACGCGAAAAAAGCTGCACGAGAGACTTGCTGCACATAAACCGTTTTCAATATGGACGGTTGTGTGCAGTTTTTTTGTGGGGATTGTAACAAAATACAAGCTACATCGTCTTACTAATGAAGCCTTAAACATAAATGGAAAAAAATGTTGAAAATAGAAAAATTAAAGATTAATATGCAAAAAATTTCAAAATATTTTTAGCGAGGGGTATTGTTGAATAGAAAGCTTGTAGCAAGTTTTATTACTTCTTGCGTTGTTCTGGCGACAATCACTACTGCATTCGCAGCTACTCCGATGGGGATAGCACAATCAGAAGCGTCAATCAGTGGAAATCTGT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCGAAGACCCGAGAAGCTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 8 4884810-4883365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085874.1 Brevibacillus sp. HD3.3A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4884809 37 100.0 36 ..................................... AATTTTATGGTATTATTATGAGAAAGACTTCTCGTT 4884736 37 100.0 37 ..................................... CAGAATTGCAGGTTATCAAAATCGATGTTGATTGCTT 4884662 37 100.0 38 ..................................... TTATCTAGGTAGCTTGTGGTACTACCTGGGAGAACAGC 4884587 37 100.0 37 ..................................... TGGACGGCTCTGATCCGACTGTTCGATATACTGGGCC 4884513 37 100.0 38 ..................................... CCCTGTATTTGCCGATAATCACGCGTTCCGTTGCCGTT 4884438 37 100.0 36 ..................................... GACTATCGAATTGTGTTTGCCCCTCATCCCACACGC 4884365 37 100.0 38 ..................................... CCCGTCGCTGCACAGCCTGCTCCCTCTCGATGCTGGTC 4884290 37 100.0 37 ..................................... ATTGCTGCAGGCCATCTAAATCGGTCCAGCCAATCGG 4884216 37 100.0 37 ..................................... TGGGTGAACTGCGAAAGCAAAAATGCGTAGGTGTGGC 4884142 37 100.0 38 ..................................... ATGGAATCAGGCTTTATTTCGGAAGGGTTGTCTCAAGC 4884067 37 100.0 36 ..................................... GGATCATGGCGATGGCACTCGATGAGAACCGGAACC 4883994 37 100.0 38 ..................................... TAGTTTGTATGAAGAAGATGTTGGCAAGCCATACATCC 4883919 37 97.3 37 .......................C............. AGGGTAAGTCAACCAGGACTCGTTTCCCCTGCTCGCG 4883845 37 97.3 37 .......................C............. CGCACATGGATCCGAAAAGCCGGCCACAGCCCCGCGA 4883771 37 97.3 39 .......................C............. AGGACACCAGTTTGGCTGTTTTTTTGTACTCCTCCCAAA 4883695 37 97.3 35 .......................C............. CGGCGGGCAATAAAAATAGCCCCGGTCGGCTCGGG 4883623 37 97.3 37 .......................C............. GCTGCGCAATGCCAATGTTGTCGTAACGGATTTTTGG 4883549 37 97.3 38 .......................C............. CGTCTGCAAACTCATCTGTGTTGAGAAAGACATCCAGG 4883474 37 94.6 37 .........A........A.................. GTGTGTGATCTCCACAAGACACCCGTTTACTTCTGCA 4883400 36 81.1 0 .........A........A...CA...A-.......A | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 98.0 37 GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Left flank : AGCTGGAGAAACTCGTAGGGAACGCGAGTGCAACTGAGCGAGGGACTTGCTGCACATGAGCCGTTTTCAGTATGGACGGTTGTGTGCAGTTTTTTTGTGGGATTGTAGCGGAATGGAATGAAGTGGTCTGTTCACGCAGGGGGGATTTGTACGGGAGCGGACTTGCCGTATTAAAGGAGAGTGATTTGTTTGGGGAGTTGGATGAAGGAAGTGGCGGTTGAAAGATATTTGCGTTTGTGGATGAAAAGTTGTTTGGGTGCTGGATCGTGTAAAGAAATGGATAGATGGGATGGGGGATAATGTTTTATTATAAGTATGAGGGCGAATGGTTACCCTGTAGCGAGGAAAAAGAAATGAACAAGATGCGTACAGCCGATTTTCGAGGATAGGGCGTGATTTTTGACGAGAAGTGAATCCTCGAAAAAAGAGCGGGTTCTTGTTGGCAGTGAGTATGAGGAAAGCCTTGGCGTTATTGAGGTTAAGCATGGTAGTCAAAGTCG # Right flank : CCTGGTTCTCCTGCACCGTCCCCATCTTCCTAGTTACATTACAGATCCAAATGGTGCGGCTCCCGCCACGCACATCATGAAAGCCAGAGTAAAGTGTGGGCTATGCTTATCAGAAGTTTCTGAATGGAACAGCAAAGATGAGGAACCTAGTTGTCGATGCATGTGAAAAGGGACTGCTAGTTAGCAGGCTTGTATCAATTTACGTTCACACACCTTGATGATTGCGAAGCAGGACAGCATTTCCAGCGGCGTTGTTGAGAAGTAAGACACTTCAAAAAGATTCCACTTGGTCGATAAAGCAAAGCTCAAGGTTAACGCCCATTCTTTGTCAGAAAGGCACTTCATTTTCCGACTCAACGAAAAAACTGAAACGAACATCCCCCCGTATATTTGTCAAAATGAAATAACGCCCTGATGAAAATAGAAAAAGAGAGCAGTATGAAAGACGATTTCACATTATGTTACGTTCTGAAAGCTTAAACAGTAAATTGGACTACTCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Alternate repeat : GTTACATTGGAGACCCGAGAAGTCAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //