Array 1 999-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOQY010000060.1 Escherichia coli strain MVAST5574 NODE_58_length_1105_cov_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 998 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 937 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 876 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 815 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 754 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 693 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 632 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 571 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 510 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 449 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 388 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 327 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 266 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 205 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 144 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 83 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42899-43807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOQY010000009.1 Escherichia coli strain MVAST5574 NODE_10_length_202030_cov_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================ ================== 42899 27 100.0 32 ........................... TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 42958 27 100.0 31 ........................... TGCACGCCCTGCCGGAATCTCCCTCGCTCTC 43016 27 100.0 31 ........................... AGTAAGCCGGTTGATTATCGCCGGGATATTA C [43024] 43075 27 100.0 32 ........................... AGATTCGCGCAATGTACGGTAAAGACAGCACC 43134 27 100.0 31 ........................... GATTCTGCACTCTTTGATGTAATGGTACTGC C [43142] 43193 27 100.0 31 ........................... CCATTCTTGTTGTCGTTCATCAAGCGCAGGG C [43201] 43252 27 96.3 31 .....T..................... TTTGTTTTGATGATTTATCAGTATATGAATT 43310 27 100.0 31 ........................... ATTTTGCGCGGCCTGCATGAAACCAGTGGCA 43368 27 96.3 32 A.......................... GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 43427 27 100.0 32 ........................... ATTTAGATACGGCACACAGGAATGCGCTGGAT 43486 27 100.0 32 ........................... CATGGGAGTCCAGATTACAAATTCCAGAATGG 43545 27 100.0 32 ........................... CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 43604 26 96.3 32 ................-.......... ACCGTTGCTACACATATGATCAGGCATGTGCC 43662 27 100.0 31 ........................... GACGATGAGACGCCCGGTGTGCCGCGTTCGT G [43678] 43721 26 96.3 32 ..................-........ CGTTTAGCTCCGCAATGTTGGATATCACTGAT C [43729] 43780 27 92.6 0 ..........A...............A | A [43799] ========== ====== ====== ====== =========================== ================================ ================== 16 27 98.6 32 GAGTTCCCGCGCCAGCGGGATAAACCG # Left flank : ACTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCGCGCCAGCGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70946-71645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOQY010000009.1 Escherichia coli strain MVAST5574 NODE_10_length_202030_cov_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70946 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 71007 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 71068 29 100.0 32 ............................. CTCGTACGCCGTCTCACTCCGCGTGAGTGTGA 71129 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 71190 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 71251 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 71312 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 71373 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 71434 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 71495 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 71556 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 71617 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //