Array 1 54-558 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJL01000024.1 Thermus thermamylovorans strain CFH 72773T Scaffold24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54 29 100.0 32 ............................. AGATGAGCCGCCCCGACCACGTGGCCGAGGTG 115 29 100.0 32 ............................. GCCTGGAAAGGGCTAAGCTCCCTTGGGCCCAC 176 29 100.0 31 ............................. TGAAGCTCGCCGGAGTACATGCCCGCCCGCA 236 29 96.6 31 ............................T CCCCCTTCCCGCTCAACCATGCCCCAGGACG 296 29 100.0 32 ............................. ACCCCCCTTGCACTCCGGTATCGCCCCCCGGT 357 29 96.6 31 ............................A GCTTCCCTAACGAGCCTATCCACCGCCCTCA 417 29 89.7 23 .....................NA..T... GAGCGGCGAGCGGGAGGTGCGAG Deletion [469] 469 29 96.6 32 ...........A................. GAGTGGGCCCGGAAGATGGCGAGGGAAGGCTA 530 29 86.2 0 ...........A.G............G.A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 31 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : CACGCACGTGGGGATGGACCGGCATCCTCAAAGGCCATCGCCGCCCGGGTGGCG # Right flank : AGTAGAGGAAAAGTTTTGAGCATGAGATAGGCTTCGTAAAGAAAGTTTGCAGTAAAGACCACAGGGTTCTAGAAGGGGGAAACCTTGAACAAGGGATACCTGTGGGATTACAATAGCCTCGGGAGGTGCAAACCTATGCACAAACTTCTCCCGGGGGTTTTGCTTTTAGCGGGGATCGTACAGGCTCAAAGCTGGAACATGGCCACCCCCTACCCTCCGGGCAACTTCCACACCCAGAACATCCAGCAGTTCGCGCGCGAGGTGGAGGAGGCCACCGGAGGCAGGCTCAGGATCACCGTCCACCCCGGGGGCTCCCTCTTCCCCCACCCCCAGATCCTGCCCGCCGTGAGGAACGGGCAGATCCAGATGGGGGAGGTCCTCATGTCCCTCCTGGCCAACGAGTTTCCCATCTTCAACCTGGACGCCATCCCCTTCGTGGCCACGGGCTACGAGGAAGCCAGGAGGCTCTACCAGGCCCAGCGCCCCGAGGTGGAGCGCTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10219-9825 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJL01000030.1 Thermus thermamylovorans strain CFH 72773T Scaffold30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10218 29 100.0 32 ............................. GTGGCGGCCATCGAGGCCTTCGCCCGGGCGGC 10157 29 100.0 32 ............................. CATATTGAGGCTCCAAACTATTTTAGCGGCTG 10096 29 100.0 32 ............................. GATCTGGGGCTTAGGGTTCGCCCCTTCCAGGA 10035 29 100.0 32 ............................. GCTCTGGCCGACCTTGGCGCCCTAGTGGGTCC 9974 29 100.0 32 ............................. TGCAGGGGAACCGGAACCCTGGCCTTTACCGC 9913 29 100.0 31 ............................. TCCCCGCTTTCGTGGTACACCAGGCGGGTCC 9853 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : ACGCACGTGGGGATGGACCGGGAAGCCCCCCGCGTTCTCATGGGGGGCTCA # Right flank : TCCTTCGACTTGCAGGAGCGCAAGCATCTTACGGCCATGTGGCGGACCTTTTTTATGGAGTTTCTGCGCATCCTGAAAGCCTCTGAGGCTTGACAAATGATAACGCACTTTCAGTATTATCCAGTAGGGGTGCGCCTATGCGCGGGAAAACCTCGCTCCTGGTTCTTGGTTTGCTCCTGGCTCCTATGGCCTTTGGCCACCGGCCGGCACCGGAGCGACCGGAAGCCTTCCAGGCGGAGGCTCGGCTCTTCGCCTTAGACAACCGCCAAGGGACCAGCCGGGTGGTGGCGGTGGACCTGCCTGCGGGGGAGATGGTGGCGGAGATTGCCTTGCCTCCCAGGGGGATGAGCCTGGTGGCCACCCCTTCGGGCCGGTACCTCCTGGTCGCCCGAGGCCGGGACACGGATCGGCAGTGGCTCACGGTGATCTGGACCGGGAAGGAGGAGGGGCGCTGGAGCCGGCCTGTGGTGGCCAGGAGCCTTCTCCTGGGCCGAGGGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 628-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJL01000028.1 Thermus thermamylovorans strain CFH 72773T Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 627 29 100.0 32 ............................. ACCGGCACGCCCTGGCCGTGTGGGGTCGGGGC 566 29 100.0 32 ............................. TTAGCCAATACATCATCCCCCCAACGGGCGAA 505 29 100.0 31 ............................. CTCTGGGGCAGGGGCAGGAGGGGAAGCGGAG 445 29 100.0 31 ............................. GGGCAGGGTGTTGAACTGCAACGGGGCATCC 385 29 100.0 33 ............................. AGAGGCTCGCAGGCTTCCCATTCGCCCCCACCC 323 29 100.0 31 ............................. GCTGGATCCACTCCACCTCGTCCAGCCCCGC 263 29 100.0 31 ............................. GCCCCGCCCTGGAGCTCCTGGTGGACCCCGT 203 29 100.0 32 ............................. AATGCCGGCTACCTCAACCTCCGGCAAGCCCG 142 29 100.0 32 ............................. AGCCCGAGCCGCCCTAGTGCGCCTCAGGCCCT 81 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : CTAGCTTCTCCAAAGCGCTTCCGTACTGCCGGGTGGGAGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAAAGGGCCAAGGCCTCCACAGGGTGGAGGGCAGGCGGGGCCTCCCTCAGGCGGTAGACCCCCCGGGCCACCCGCTCCAGGGGGTAGCCTTGGAGGGCGAGGGCCTCGAGGTCCCGCTCCACCGTGCGGGGGCTTACCCCATAGCGCCGGGCCAGTTCCCCCACGCTGTGGGGCCTCAGTTTCAGCTCCTCCACCAGGTCCAGGAGACGCTCTGCCTTGGATTTTTCCGCCATCTTGTGGGGATTATAACCGGGCATGTGGTACCCTAAGAGCCAAGGGCCTCCTCCTTCCCTTCCCGCTTCCCGGCCCAGCTGGCCCGAGTGCTGGCGTGGAGCTTGAAAAGCCGATCCAAGCCACCTCCTTGCTTGGGCTTTTTCCTTTTACAGACCCTTAGAGGGGGGTGAGCAAGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GGGAGGCCGCGCAAAGCGGCCTCCCTGACTTTTGTAGTCCCCACGCACGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10704-11157 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIJL01000028.1 Thermus thermamylovorans strain CFH 72773T Scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10704 29 100.0 32 ............................. TCCTGATTGAGCAGAGGGCGGTGCTCCATCTC 10765 29 100.0 32 ............................. GACTTCCACTTGTTGCCGCCACCGATAGCGCC 10826 29 100.0 32 ............................. AGATCAGGGTTTCGGCCGATCTGGGCTACTGT 10887 29 100.0 32 ............................. GGGGGCGGCAACGGCCACAAGGAGGTGCTGGC 10948 29 100.0 31 ............................. AGCTTGAAAAAGGGGCCGTACAAGCAGTGGA 11008 29 100.0 32 ............................. TGGGCCACCCCGGCAACCCGAGCAAGGTCATA 11069 29 100.0 31 ............................. GGGGAACGCTCGTGCCTCCCGTACCCGTCCC 11129 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GAAGAGGCCAAGGAGGAGGAAGAAGACCCCACCCGCCCCGGGGGGCTTTGGGACCCGGAGGGCGAGGTGGAAGGGGGTGTGGCCTATGGTGGTGATGGTCCTGGAGAAGGTGCCGAGGAGCTTGAGGGGTGAGCTGACCCGCTGGCTCTTGGAGCTGGACACGGGGGTCTTTGTGGGCCGGGTGAGCGCCGTGGTGCGGGAGCTCCTTTGGGAAAAGGTTGTGGAGAAGGCCGGGGACGGGCGTTGCGCCATGGCCTGGCGCACCAACAACGAGCAGGGCTTCGCCCTGAGGTTGCACGGCTACCAGGACCGGGTCTTGCGGGACTTTGATGGTATAGTGCTGGTGTCGGTGCGCACCGCCGAGGCTTTGCGCAAAGCGGAAAAGCTGAAGCGTATAGCCAAAGCCGTGCGCGGGGATTTTGAAAACCAAACCTCGGAATAACTCTCTTTACAGACCCTTAGAGGGGGGTGAGCGAGGGTTTTTGCTGTCTGGGTCATGT # Right flank : GAGAATGGCGGCGATCCAAGTACGCTAACGGGGTAGTCCCCACGCACGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //