Array 1 504477-504244 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXD01000002.1 Bifidobacterium adolescentis strain Km 4 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 504476 33 100.0 35 ................................. TCGTCAATAAAGCCAGTCTCGCAAATATCATCAAT 504408 33 100.0 32 ................................. TTCGGCACCGCGAAAGGCGGAGGAACGCACAA 504343 33 100.0 34 ................................. ACGATAAGCGTGTACGACCGGACCTTCACTACCG 504276 33 84.8 0 ....T........T.....A....T.....G.. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 96.2 34 GTCGCATCCCATACGGGATGCGTGGATTGAAAT # Left flank : GTCGTAGCCGGTCTCCGCGCGGAGCCTGTCGTGCACGCGTCTGGCGGTGTGGCGCTGCTTGCGTGGCGGCATGCGGTCGGCCTCGAGCCATCCGTCGACCAACGCCGCGTACGGGTCGATCTTGGAGCCGCGGCGCCTGTCCGTGGGCGGTTTCGGCGTCATGTCGTCCATGTCGGCGTATTTCGCGACAGTGGCGCGGTCCACGTCCGGCCTCCTCGCGATCTCCGACCTGGACACTCCCTGACGGTCCAGTCTCCTGATATCTTGCCGTTTGGGCATCGGTATCGCCATCGTCCTTTCCTTCCCGAGCGCCGCCGGCTGCAGCCGGCGGATTCGTTTTTGGGCTGCGTCTCGGGAATATACAGGCACGGCGGGCTGGTGCCTGTTTTCGTCTGGGCGGTCATATGGTGCAGTTTCCGCTGGAAACCAGCAGCCTATGCTGCGGAAAAACGGTGCAGAAATTGCTTAAGAAAAATTGAAGCAAAACAGGTTAAGCAGTT # Right flank : GGTCCGCTTTTGAACTGCCGTTTTTTGATTTATCGCTCACTTCACATGACATATGTCGGTTTGGTCAGTTAATTTGTGAATATTCGACCATACGACTAGAGTGGCCTGTGGCTTTCCGGTCGGCTTCTTTGCTGGCTGGAAGTTTTGCACAGACTTGATTTGTATCTGCCGTGTGCCTGCGTTGTATTTACATCGCGCCAGCATGTGTGCGGAAGCAGATCGCAAGCGAATGGTTCTCAGTACCATCCATGTGAGTCAAGCACACATCTTTTGAGAAGCAGTCGCGATGCCGGGAGTCGGGTTCGTCGTAATTCAAACGTCGCGTCCGTTCCCGGTTTTTTTATCTGGCATACGGTGTCACTGCGGGAAGTGAGAATGAGTTCCGCGCCCGCTACGATGAACAGTGCAAACGATTATTACTTGTGTGTGTGGGGGTCGGCGTTCTAATCTGCGGATGGCGGAATCAATTTACCCGATTGGTGCTCATCTTCGCGTTCTCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 507019-506184 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXD01000002.1 Bifidobacterium adolescentis strain Km 4 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 507018 33 100.0 34 ................................. TTGCGCCATAGCTGACGAAAAGCTGCTTCCACGC 506951 33 100.0 34 ................................. GGTTTGACCGGCTACGCGATTCGCGTCACGGGCA 506884 33 100.0 35 ................................. CTGCCGCAGCGTGACGAGCTGGTCACGCAGGATAT 506816 33 100.0 34 ................................. TAAGGACGAATCATGAGTATCACCATAGAGAATC 506749 33 100.0 33 ................................. CACAAGTCTCGCCTATAACTTAGGACACTAGAG 506683 33 100.0 34 ................................. ATCTGAGTTGCGCTTGGCATGCGCCTCTGATATT 506616 33 100.0 32 ................................. CTTTTCGAGGGCGTCAAGTCGTGCGGAAACGT 506551 33 100.0 33 ................................. AGTTTCGCCCGATACGTTTCGTCAAAAATCGGA 506485 33 100.0 34 ................................. ATCGACACCCACCGGGCCGAGATCAACGACATGA 506418 33 100.0 34 ................................. TTCGACAAGCAGCCGGAGAAGGAAGTCATCGAGA 506351 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 506283 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 506216 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= =================================== ================== 13 33 99.5 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GGATTGAAATTCCGACCTGGCCGCGGACGATCAGGGAGGATAC # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTGCGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1264-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXD01000027.1 Bifidobacterium adolescentis strain Km 4 contig00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1263 33 100.0 34 ................................. CTGCTTACGGGCGTGGATTTCACGCGTCTGTGGG 1196 33 100.0 33 ................................. CTCGCAGATTGCAACCATCCTCGAAAAACTGGG 1130 33 100.0 34 ................................. TTCGTCGTGCGTTTCCCGCGACTCGACGCCCTCG 1063 33 100.0 34 ................................. GATAGGTGGCTTGTGCGCGTCCCTCAAGTATGCG 996 33 100.0 33 ................................. TTGCAGATAAAATCATCACGACGAAAACCCAGA 930 33 100.0 34 ................................. GATGCGCGGCTGAAAACGGGGAAAACGGCGACAC 863 33 100.0 34 ................................. TTTTCCGTCGAAGTCGTGCCGCCCCCTTCGCCTA 796 33 100.0 34 ................................. ATGGACCCGCAAACCGGGTCGATGAACGTGTCAA 729 33 100.0 33 ................................. CAGCAATTGGCGTCTAAGACGCATTCGAAGATT 663 33 100.0 34 ................................. ACGAAGAATATCGTTGATCTTTGCCCCTTGAGCG 596 33 100.0 34 ................................. TCTATGCGCAATGGGTATATCGAAGAAGGGCTTG 529 33 100.0 33 ................................. ATTCCAACGGTTTAACCTCACTTGAGGGTCACT 463 33 100.0 31 ................................. TTTTGCGCCGTCCTGTCAAGTCTTTTATTTT 399 33 100.0 33 ................................. TATATCCCCAACTACAATGAGGCAGGGGCGACA 333 33 100.0 34 ................................. ATCAAGCCTGAGCCACGCCATAAGCATCAAGCGA 266 33 100.0 34 ................................. ATGGATGAAGAGGAAGAATCCCAGCACATGCGAA 199 33 100.0 33 ................................. CTCTTGACTTTTGGCGTTCCAATAGAACGCGGG 133 33 100.0 35 ................................. TCGTACGCGGTTATGGCGCTTTCCCGCGCCTGTAT G [119] 64 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 19 33 100.0 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : ACGGAGAGCGTGGATTGAAATAAGCGCCATGCGGCCGTGTATTGCGAGACGAAT # Right flank : TCATGTTGCGGGCGTGGCCTTCTGGATGTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 903-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXD01000029.1 Bifidobacterium adolescentis strain Km 4 contig00029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 902 33 100.0 35 ................................. AACAACATGTGTCTGACCAATGGCGTGAATCAGGC 834 33 100.0 34 ................................. GTATTTAAGGAGACATTTTGACTCAGCAGATTCC 767 33 100.0 34 ................................. ATGAAAACATATTGCAAACACACCAGAGTGGCCG 700 33 100.0 35 ................................. ATCCAGCGCGTTATCGAAGTACAGCAGCCGCGAAG 632 33 100.0 33 ................................. TCAAGCCAACACACCGGCTCTCATGTCAGTATC 566 33 100.0 34 ................................. AAGTCGTTGTCCATATGGACACGCCAATATCCGC 499 33 100.0 34 ................................. ATCTGAGTGGCCGAGGGCATGCGCCTCTGATATT 432 33 100.0 35 ................................. TCTGTCACTATTTGTCAGATTTTTTGCAGTTTGTC 364 33 100.0 33 ................................. GCTCAGCGAGCTTTTTGATACTATCATGCAACG 298 33 100.0 34 ................................. GCAATTACGACGGATGATAATAAACTTAATTATC 231 33 100.0 35 ................................. TTTTGCTGACATGATTAATATTACTACTACAGTGG 163 33 100.0 34 ................................. GTCCATATTGTAACACCGTTGCTGAAAATATTCC 96 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 13 33 100.0 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GG # Right flank : TCGAGACATATGGCACAGTCCTTAAGATGGCGAGAGTCGCTCTCCTTACGGAGAGCGTGGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 626-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXD01000033.1 Bifidobacterium adolescentis strain Km 4 contig00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 625 33 100.0 33 ................................. ATCGACACGGCCAAGTCCAGCGTCGGCGTGAAT 559 33 100.0 33 ................................. TCCATGGCCAGTCCGGCGTCGAGGATGCGCTGC 493 33 97.0 35 ....T............................ GCCGAGCATGGCGACATGATTCGCCCGCAATACGC 425 33 100.0 35 ................................. TCGCATACCTGCGAATCAACCTCCCCAAGTCGCGG 357 33 100.0 37 ................................. TGCTTATTGCGTCATGTGCGGCTGCATTTCCCGAAAC 287 33 100.0 33 ................................. AGCGCCGACCTGACCAAGGCGCAGCTGAACCCG 221 33 100.0 33 ................................. GTGCTTCCCGGCCACACTCCCCCGGAACCCGAA 155 33 100.0 34 ................................. CGCTTCGGACTGTTCCATCGTCAATGGACGCCAG 88 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 9 33 99.7 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GGAATGGCCGTCATG # Right flank : TATCGTGAGTTTCCCGCGACTCCACGCTCTCAATGGTCGCTCTCCTTACGGAGAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1253-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAXD01000008.1 Bifidobacterium adolescentis strain Km 4 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1252 33 100.0 33 ................................. ATAGGCGCTCGGCTCGGGGGCTGACGGGATTCG 1186 33 97.0 32 A................................ AATTACAATTGCGGTACTGACCAGAACGGGCA 1121 33 97.0 33 A................................ GGATACGGATAACCATATGCCGAACTGCGCATA 1055 33 100.0 32 ................................. ACAATGATGAGCCGCGCATCACGCCACGCGAC 990 33 100.0 34 ................................. TTGAAGAGCATGGGACTACTCGGCATGCGATAAT 923 33 100.0 32 ................................. CGTCCCGTGTAGTGGTTCGGTGATCCTATCCA 858 33 97.0 32 T................................ GTGTTTTATCTAGGCAGGACAATGCGCGAACA 793 33 100.0 32 ................................. GTCGTGGATGTGTTTCGGATCGTCCTTGCGGA 728 33 100.0 33 ................................. TTGTTGGCCTGCGCGAGGCTTGTGGCGTTGTCA 662 33 100.0 32 ................................. TCCATTATTTTTTAGGACGGTGATTATGGGCA 597 33 97.0 32 A................................ AGTCGGAACGAACAGCACGCAGATCGCGCAGA 532 33 97.0 35 T................................ AATTCGTTCGCCATCTGCTGAATGAGACGCAGCAG 464 33 100.0 33 ................................. ACTTTATCGATGTTGAACGCGGCGGCGAGGGCC 398 33 100.0 36 ................................. TGGATGCACGCTGGTTCCTGTACAAGCAGGGCGACG 329 33 100.0 33 ................................. GCGGAGGGTTCAAGATTTTCGGCGGACGGTCGG 263 33 100.0 33 ................................. TTGTTGCCGTATGGCAGGATGTACGCCTGTCCC 197 33 100.0 34 ................................. TTTTGCTGACATGATTAATATTACTACTACAGTG 130 33 100.0 34 ................................. GTCAAGGGTCCAGCCGATAAGCCTTTGATCTGCA 63 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 99.2 33 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TTGATGAGGACAGTCTGCGCTTTTATAAACTTGGCTCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCAC # Right flank : TTCCGACGCGGACGCGCTCCACGGGAGAATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //