Array 1 89874-89296 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLE01000011.1 Escherichia coli strain MOD1-EC6730 MOD1-EC6730_11_length_117681_cov_30.7572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89873 29 100.0 32 ............................. TGTTGTTTTCCGCCTGGTATTCTGGCAGATCA 89812 29 100.0 32 ............................. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 89751 29 100.0 32 ............................. GAGTTTGAAAAATCGTGTGCGGATGCGGCAGC 89690 29 100.0 32 ............................. CTCAAAGGCAAAAAATACGATCTCGCCGGTGT 89629 29 96.6 32 ............T................ GTTTGATCAATATCACGCTGACAGATTACGGC 89568 29 100.0 32 ............................. TGCGGAGCCCGCGGTTTTTTGTGTTGCCAATG 89507 29 96.6 32 ..........................A.. GAACCGGGCATATCGCAGTGTGGGCGCTGATT 89446 29 100.0 32 ............................. AGACACCAGAGGAAATAATAAAAATGATGGGG 89385 29 89.7 32 .G.........AT................ GGCGCACTGGATGCGATGATGGATATCACTTA 89324 28 75.9 0 ..A........C..T....T-.G.....C | C [89299] ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGGTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116305-115422 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLE01000011.1 Escherichia coli strain MOD1-EC6730 MOD1-EC6730_11_length_117681_cov_30.7572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116304 29 100.0 32 ............................. TACGCCCTGCTGCCACAGTAGCTTAACACCGT 116243 29 100.0 32 ............................. CCCCCAGGCAGTTCAGGTAAGAAGCCTTGCAA 116182 29 100.0 32 ............................. CATACGCAACTGCTGCCACTTCTGTTCTAGAG 116121 29 100.0 32 ............................. TCAGCCTGTACTACGAACTCAGGATTGTCCAA 116060 29 100.0 32 ............................. CCTACATGGTACAATCCGTCAGGTACACCACG 115999 29 100.0 32 ............................. AACACTGAACGAACTGGCCTACTCCGGTGAGA 115938 29 100.0 32 ............................. CATGAAGTCACCCGACACTTGATGCTGAAATC 115877 29 100.0 32 ............................. CTCGAGAGCCAGAGCAGTCTAGGCCGTAAGAC 115816 29 100.0 32 ............................. CAGATGGGCCTGAGGTTTGCTTGTGACCCCAA 115755 29 100.0 32 ............................. TAACGCGGTAGCAGGTGATTGGTGTCACTTGC 115694 29 100.0 32 ............................. CGGCGAAGTAATTTTTCGATCTGGTCAGCCAT 115633 29 96.6 32 ...........................C. TATTCGTAAGTTTTATGGGTGGATTTTAAGTG 115572 29 96.6 32 ...........................C. CGCGGGCCGTATGCCTTGCTTATGAGGGGTAA 115511 29 96.6 32 ...........................C. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 115450 29 86.2 0 .A.C.......................CA | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACGG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75359-72947 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLE01000018.1 Escherichia coli strain MOD1-EC6730 MOD1-EC6730_18_length_85622_cov_33.0404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75358 29 100.0 32 ............................. CCTGTACTGCGTAAGCAGAGAAGTGATAAGAA 75297 29 100.0 32 ............................. TAGGGTCTTACTTCTTACGACCCACCCAACGA 75236 29 100.0 32 ............................. GGTACGCGCTTGCCTCTGAGTTTGCGAGCAAC 75175 29 100.0 32 ............................. CCCTAGCGGCTACTCAGCAGGCTTCCTGCCTC 75114 29 100.0 32 ............................. TAATAACTGTAGCGCTGAGATTGTTGTCAGAG 75053 29 100.0 32 ............................. CCGGTAAAACTTCTCTATTGGCTGCTATAGTA 74992 29 100.0 32 ............................. CGTACTGTTCCGCGTATCTACCAGGCAGCTAC 74931 29 100.0 33 ............................. GTACAGTAACAGTAGGTGAGGTAGGCAGTGTAC 74869 29 100.0 32 ............................. CAGATTCTACGCAGCCGTTACGGTGAGCAAGG 74808 29 100.0 32 ............................. GCTAACGTGAGAGGTATCAGTACGCCAAAGAA 74747 29 100.0 32 ............................. GTGAGTACATCGCTAGCGACTTCCAGAATCTC 74686 29 100.0 32 ............................. GTAAGCAGTGGGACGTTGCCGAGAAAATCGGT 74625 29 100.0 32 ............................. GACACGCGTTATCTGTGAGTCAATGGAGAACT 74564 29 100.0 32 ............................. TAGGGCTTACTTCTTACGACCAACCCAGCGAC 74503 29 100.0 32 ............................. CAGGTCTTAAGACTATGCAGCGTGCTGGTACT 74442 29 100.0 32 ............................. TGTTGAGGAGTGGAATCGCTGTGCGACAGACC 74381 29 100.0 32 ............................. CCACCAGTAATAATGGTTGGTTCAGAACTACC 74320 29 100.0 32 ............................. GTTAGGCGAGATGGATCGCGTAATGGTTAAAA 74259 29 100.0 32 ............................. GCTGAATGCCTCTCCTCTGCTTCTTGTTGAAT 74198 29 100.0 32 ............................. TACAAACGTGGCATATAATCCAATACCGTATT 74137 29 100.0 32 ............................. CAGTTCCCTAACCGCAAATATACATTATCGGG 74076 29 100.0 32 ............................. ACACTTGACGAGATGAACGCTTTTAAGAATTA 74015 29 100.0 32 ............................. TTGTGGATTTGTTTCTCTCATTTTCGGAAATA 73954 29 100.0 32 ............................. GCGGATTCGAATCTCAATGTGCCGGTAATCAT 73893 29 100.0 32 ............................. ACACCAATGGTGAATTTCACGCGGTAGTGAAT 73832 29 100.0 32 ............................. GCGTCTATCGCCAGCAACGATACTGATATTAA 73771 29 100.0 32 ............................. GATCAATGTCACATCACCATAGGAACGCGGGG 73710 29 100.0 32 ............................. GTTTTGTCGTATTTATTCACACTCGCTGATCG 73649 29 100.0 32 ............................. GAGAAAATCAGACTGTATGCGTTATCACACAA 73588 29 96.6 32 ............................T GGTATCCGGTAATAATTAAATACGCGTCAGAC 73527 29 100.0 32 ............................. GCAAAGCAAAACAGCGTACAACTTGACGCAAA 73466 29 100.0 33 ............................. GAAACGGCGGGCGTACTGGTTACGCTGACCCCG 73404 29 100.0 32 ............................. GCGGGACAGGATATGTTTTGTTGAACCGCCAC 73343 29 100.0 33 ............................. TTTAACGCCGGGAAGATTGATGAGGTTGTAAGT 73281 29 100.0 33 ............................. TTTAACGCCGGGAAGATTGATGAGGTTGTAAGT 73219 29 100.0 32 ............................. GTTCAGGCTTTCGTGTGTCCAGCCGGCTTCAG 73158 29 100.0 32 ............................. GCACCGGACACAACAACGGGCAGGGACCCGCC 73097 29 100.0 32 ............................. AAATCACCTTCCAGGGTGTTCATTTCCGGTTC 73036 29 96.6 32 ..............T.............. GGAACATTTGCAGGTGGCTTTTCATTCTGTGC 72975 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACGACCCGCGCCGGATATGCTACCGCCAGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTCCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCTGCAAATCACCCAACTGGCAGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTAGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGATAATTAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CCGCACGCCTTTCCATTTCCCGGACGAATGCAGTGTTCCCCGCGTGCGTATTTTCATGGAAGGAGATCACCCAATAACCCCCTGTGTCAGGATAGTTGTCAGCTTGTGAGTGAGGTTACTGGCCTAGAACGGAAATACCTGACGACAAGTGCTGCTCATCCGGAGAAGGTCATTCCTTCTGTAAGCAACAGCTCTGGCAGGGGGAACAGAACTGTAATGATTGTACATATAATTAGAGTTGACTACCTTCGCTGCATGAAAACTTTATTCAGGTTGACTGGGCTTTTGAATGAGAAAAGTCTCAGGGGGCAACCTTCATTAACCTGTTTTCGTAAAGCAAGTGGCATTTTACCGTTACCAGACCACGTCTTGGTATCGCCGTTCTCATCCTCAAAGATATATTTCGCTTTTCTCACACCGCCTTTGGGTTTTCGTTTGGTTTCCGTTGTCCCTGCAATAGCAGAAATTGGACCCTGCCATTCTTCCGGGTCAAGCCCCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //