Array 1 32-3241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAD01000013.1 Mycoplasma ovipneumoniae 14811 contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 32 36 100.0 30 .................................... ATAAAACGTCAGGCAACTTATGCTCGAAGA 98 36 100.0 31 .................................... AAGGTGCCTAAAAGGCAAAATAAGGGGCATA 165 36 100.0 30 .................................... CAGTCAAAATTGGGGGCCTTCCTGCCTTAT 231 36 100.0 30 .................................... GGTTATGCCCTACCCAAAGAATTTAAAGCA 297 36 100.0 30 .................................... TCAAAATACTATTAGTGCTAACCGGGGAAT 363 36 100.0 30 .................................... ATATGAACAACAGGAAAAGCATTCTGATAT 429 36 100.0 29 .................................... CATATACAGTTTTTGATATCACTTTTTGG 494 36 100.0 30 .................................... ACTTTTGTTTATCGAAATTTAGACTTTGGA 560 36 100.0 30 .................................... CATTTCACCCTTGCTTGTATTCGTTTGAAA 626 36 100.0 32 .................................... TTAACCTCTTTATTTTTTTAGTTTTGGTTCTT 694 36 100.0 30 .................................... TTAAAAATAATTTCTCCGGTTTTAGGGTCT 760 36 100.0 30 .................................... AGACATGGACTTTTTGCCTTATCTAACAAA 826 36 100.0 30 .................................... AAAACAACACAATTTTAAGGATTTAAATTA 892 36 100.0 30 .................................... ACAAGGACTAATTAGAAATGGTCTGTTAGC 958 36 100.0 30 .................................... AAAAAAGCAAAAATGAACTGGTCGACTGTG 1024 36 100.0 32 .................................... AAAACCAAAGCAGTACTTTCTTGACACCAAAA 1092 36 100.0 30 .................................... ATACATTATCTCAGAACTAGAACAAATTTT 1158 36 100.0 32 .................................... AATAACCTTTAACACCTTTATGTTCAACTTTC 1226 36 100.0 30 .................................... ATTCTAAATAGACCTAAATTATAATTAACA 1292 36 100.0 30 .................................... AACTTTGAAATTGTCTTAGAAGTCGAAATT 1358 36 100.0 30 .................................... TGATATACATTTTACAAATAATACTAGTGT 1424 36 100.0 30 .................................... TAAAGGTAGCATAATCAGTTATATTTCCCT 1490 36 100.0 30 .................................... AATTGAAGAAAAAGAAAATTATAGTCAAAT 1556 36 100.0 30 .................................... TTTTTAGACCAAAATTGAAAACTTAACGAG 1622 36 100.0 30 .................................... AAATCCCTTAGGGTAAAACAATCGCGGTAG 1688 36 100.0 31 .................................... ACTTAGAAATATTAGAAGAAGCACCAAATCA 1755 36 100.0 30 .................................... AGAAATATTTAACGTACCTAAATATATCCA 1821 36 100.0 30 .................................... GTATTGTCATTTGCTAAAAATCCTTGGTCT 1887 36 100.0 30 .................................... GTACCTTTTCGAGTTTGACCGGTTACATTT 1953 36 100.0 30 .................................... CAAAAAACGAAAATTAATTTACTAAATAGT 2019 36 100.0 30 .................................... CAAAAAGCAAATAAATTTTTAAATAAATGA 2085 36 100.0 29 .................................... AGAACCATTAAGGGGGGGGTTCTTATTAA 2150 36 100.0 30 .................................... ACCCCTACCGGTTTTAGCCGTCAAGACCAA 2216 36 100.0 30 .................................... AGCCTCAGGAGAACTAGGATTTGAACTTAT 2282 36 100.0 30 .................................... TATAAAAAAAGTTAATGAACTTTTGCCTGC 2348 36 100.0 30 .................................... AAAACAAATAGAAATACTAAACCAGGATTT 2414 36 100.0 30 .................................... ACTTTGAGCACTGGAGCAACCCGATTTGGA 2480 36 100.0 30 .................................... TGTTTTAAAACAACCACTACCTTATGGTGA 2546 36 100.0 30 .................................... CAAAAATACCTAATCTAACGTGGAAATGGT 2612 36 100.0 30 .................................... TCGTCGGTTTTAAAATTAAATTTTATATCA 2678 36 100.0 31 .................................... TTAAACTTGTCTATCGTTAGGGTTTGATTGG 2745 36 100.0 30 .................................... TATTAGAGAGCTTTATAAAGACTACAATAT 2811 36 100.0 30 .................................... ATACCAACTAATGATCCAAAAATAATTGTT 2877 36 100.0 30 .................................... TACAAACTGCATGCTTCTTCTTTTAATTCT 2943 36 100.0 29 .................................... CCTGGACTTAAAGGCGAAAAAGGCGACCC 3008 36 100.0 30 .................................... AAGAATTGAGCGTTGATTTTTAAAAAAGTT 3074 36 100.0 30 .................................... GAACTTTTTCAAAGACTCAACTAGTGTTTT 3140 36 100.0 30 .................................... GACGTTATATGGATTTAAATATGACGAAAA 3206 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ================================ ================== 49 36 99.9 30 GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Left flank : CACCCCTCAAATCTAGTTTTAATTGCTAGTTG # Right flank : AACGCTCAAAAATTTGCTTTTTTAGTGCATTTTTGAGCGTTTTTTAGTTACTAATTAGTTTAAATTTTACTGAGGATCCTAAAATATTACATCCTAAGCTACTAATTATTTCCTTACTTTTTTGTTTTTATTAATAAAATATTCTTCTAATTTTTTTTGTTCTTTAGATTCATATTCATTACCGAGTTCGTCAAGACTAATAAATTGTAGCTCATTAAGTAAACCTTGGGTTTGTAATTCCTTTTGTTTTAGTTTATCCAAACTAACGGATTTTATTGAAAATGTAGTATCTTTAACTTTTTTCTTTTTAGTTATACCACTAATATAAAAATAATGATTTTCATCCGGTCTTATAGTAATTGATTTTTTGGTGACTTTTTCTTTTTCTTCGCTGGTTTTTGCTTTGTTATTTTCAGGTTTGAAATCAAATTCTTTATCAACTTTCAATTTTAGAATTGCAGATTTCTTGATTATAAATATTGGTTTTGATTGATGATCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 34-532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAD01000047.1 Mycoplasma ovipneumoniae 14811 contig00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 34 36 100.0 30 .................................... TCTAATTTTTTCCACAACCAACCCCCTTTT 100 36 100.0 30 .................................... AAACCTTGTAGATACAAACTACGTGGAAAT 166 36 100.0 30 .................................... CAAAACCACCCAGGACTAAAAGGTGAAAAG 232 36 100.0 30 .................................... CAATGACACTTAATAAAACAATCATATTTT 298 36 100.0 30 .................................... TAATCAATACTGATTTTCAATTTTTCGAAT 364 36 100.0 31 .................................... TTGCTGTTTTTGTAAATTGAAATGAAGACTT 431 36 100.0 30 .................................... GGCGTTTAAAGTGGGTTTTAAGGCATATTG 497 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Left flank : CTTTTGACTGTGGCAAAGCAATATGGTTCCAGTG # Right flank : AAGTCAAAGCCGGATTTATGAATGCTAGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1-563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAD01000049.1 Mycoplasma ovipneumoniae 14811 contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AATTGAAAAAAATCCCGAACATTTAGTGTT 67 36 100.0 30 .................................... GCTGGTGCTAACCAATCAGACATTAACTAG 133 36 100.0 30 .................................... AGAACAAATAGCACAACTACAAAGTCAAAT 199 36 100.0 30 .................................... CAGACAACTAAAAGCACGTATTTTAGAATT 265 36 100.0 30 .................................... AAATTTAGACAAAGCAATCCAAGAATATTT 331 36 100.0 30 .................................... AAATTTTTGACTGAAGCATAGTTGATTTAT 397 36 100.0 30 .................................... TATTTTTGTAAAGCCATATTTTTTAACAGC 463 36 100.0 30 .................................... CTTCTTTATCTTCTAACCCAAATACTTTAT 529 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 25666-30070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAD01000012.1 Mycoplasma ovipneumoniae 14811 contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 25666 36 100.0 30 .................................... AACCCCCGTTTATATTGCCTTTGAGTGCTT 25732 36 100.0 30 .................................... ATATGAGCAACAAGACAAGCATTCAAATAT 25798 36 100.0 30 .................................... AATTCTGAATTCTAGGTCTTCTAGTCTATC 25864 36 100.0 31 .................................... AATTGAACGCGATAAATATGAAACATTTTTT 25931 36 100.0 30 .................................... ATAATCCAAAATTCTTTGATCTGCCTGATA 25997 36 100.0 30 .................................... AAAGCAAAACCAAAATTTGCTCGACAGTTG 26063 36 100.0 30 .................................... TAGTGTTTGACACGACGAAAGTTTATATGC 26129 36 100.0 30 .................................... AGACTTATATTCAGGCTACAATATCGAAGA 26195 36 100.0 31 .................................... GAATAACCGAGGGTGAGGCAAAAACCGTTAC 26262 36 100.0 30 .................................... ACAATTTACTTTGACCACCCCGAAAAAAAA 26328 36 100.0 31 .................................... TTTTTTCTTGATTTAACCATATTGGGTTATT 26395 36 100.0 30 .................................... AGAACTAGGCATTGACCCGTCTTGACTAAG 26461 36 100.0 30 .................................... AATTGTTGAAAAATATACCCAGTTTCATGA 26527 36 100.0 30 .................................... ATTCTTCAATTTTTCTTAACGATATTTTAC 26593 36 100.0 30 .................................... GCCTTATTAAATTATATTGAAGAACTAAAA 26659 36 100.0 30 .................................... TTATTAATAAGTCCATATTATTAATATCTC 26725 36 100.0 30 .................................... CGAATTCGCGGAAAATTTACCTTGAAAAGT 26791 36 100.0 30 .................................... GTTTTGTGCCAAAGACAATTGGAGCAAATT 26857 36 100.0 30 .................................... CAAAATAAAGGAGATTGAATATGAACACTC 26923 36 100.0 31 .................................... AATTTAACCGAAAGGCAAAAATTACTGTCTA 26990 36 100.0 30 .................................... TCGAAATTGCTTTTTAAATTTCCTTTATTA 27056 36 100.0 31 .................................... TTTTATTTTTAAAAAAGTTATTTACACTTGG 27123 36 100.0 30 .................................... CATTCTTGGAATTGAGAGTTTATTAGAACT 27189 36 100.0 30 .................................... CACTAACCTTAAATTTGATTATGTCGAATT 27255 36 100.0 30 .................................... TGAAAAAGCATTAAATGCTCATATTGAACA 27321 36 100.0 31 .................................... AAAGGGTCTAATCCAAGTAGTCCAGAAGCAG 27388 36 100.0 30 .................................... ACACTATTTTTCAGTCAATGTTTTTATTTT 27454 36 100.0 31 .................................... TTTTTCGCGTCGATAGTTTATTAGTGTATTA 27521 36 100.0 31 .................................... TCATTTCGTGTTTTGTTGGAATTAAAACAAC 27588 36 100.0 30 .................................... GGTGTTGTTAAAAAATTAACTTAAATATGA 27654 36 100.0 32 .................................... CTTATCCCCCCACTATCATATTTAAAAGTTAC 27722 36 100.0 30 .................................... TTAAATCAAAACGAGGAGAAAAATAATGCT 27788 36 100.0 30 .................................... AGATGTTGTAAAGGATTTAACCCAAGAGCA 27854 36 100.0 30 .................................... AAGGAGAAAGAGGAGTCCAAGGAGAAAGGG 27920 36 100.0 31 .................................... AAAGTTCCATTTGCCCGTTTAAAAGTTCTGA 27987 36 100.0 30 .................................... CTTATAAACAATTTGGCAATTCTGTTAATA 28053 36 100.0 30 .................................... TTTAGTTGTTCGTTTATTTCTTGACTAGTC 28119 36 100.0 30 .................................... TAAGCTTCTAAAATTTCATCAAGGCTATTG 28185 36 100.0 30 .................................... GTCTTTGTAATAAAAGACAAAAGTCTTTTT 28251 36 100.0 30 .................................... TCCATATGTTTTACAGGACTATCTACCATA 28317 36 100.0 29 .................................... CCAAATACACCAATTATTGCTCTGACAAA 28382 36 100.0 30 .................................... TTTAACGTATGATAATGTATATCTAGCATA 28448 36 100.0 30 .................................... CGATAATATCATTATCTAAAAAAGTATCAA 28514 36 100.0 30 .................................... CAGTTCTTTTCAGTTTTGATATATTAGAGA 28580 36 100.0 31 .................................... GTCAGAAAAACCCTAGGCCTCCCTGCCTAAT 28647 36 97.2 30 .........T.......................... CTTCTATGTTTTTTTTTCAAATTTTGGTAT 28713 36 100.0 30 .................................... TCAATAACTTTTTTTAAATTTTTACTATTT 28779 36 100.0 30 .................................... AATGCAAAAAGAAGCCTTATTAAATTATCT 28845 36 100.0 30 .................................... GTTTATTGAACATATAATCGATATTAGTTA 28911 36 100.0 30 .................................... TAATATGTTTTAAATGTATATTAAACATTG 28977 36 100.0 31 .................................... AAATCATTGATAAAATTTGAGCATGAAATTT 29044 36 100.0 30 .................................... TTTTTTATTTAAAATAAAGTAAAATAGTGT 29110 36 100.0 30 .................................... TTGAAAAGTCAACCTTTGGAAAAAATATTC 29176 36 100.0 31 .................................... ATAATGGGGTGTAATTTTGATAAATCAAGTT 29243 36 100.0 30 .................................... TACATTCATGTCTTCACTCAAAAGTATATT 29309 36 100.0 31 .................................... ATTTCCATCAATTCAATGATTAACCAAATAG 29376 36 100.0 30 .................................... TTATGAATGACCCCGCTCAAATTGGAAAAT 29442 36 100.0 30 .................................... GAAGACTTGTGACTAAAATATCTAGAAAGG 29508 36 100.0 30 .................................... TCTTTTATCGACATAATAAGAACTAGATTT 29574 36 100.0 30 .................................... AAGGAGAACGGGGACTCCAAGGAGAAAGGG 29640 36 100.0 30 .................................... TATATGAGCAACAAGACAAGCATTCAAATA 29706 36 100.0 31 .................................... TTGACAAACCGAAAAATTATTGTTTTATTAA 29773 36 100.0 28 .................................... TAGAAGCTAAAACCGAGGATTTAAATAT 29837 36 100.0 30 .................................... TTGAGAGAAAAAAGATAGGTGACTAATGAA 29903 36 100.0 30 .................................... TACAAACTGCATGCTTCTTCTTTTAATTCT 29969 36 100.0 30 .................................... CATTTTTTACGTGCTTTGTTTAAAAAAGTA 30035 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 67 36 100.0 30 GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Left flank : CTTGAATATCAAATTGATAACACTAAATTATTGAAGTCACTATTTGAAATTAATCCAAATATTCTACTTTCAAAAAATAATTTTACAAAAATAATGGAAATTCTTTTTTCAAACAAACCTAATCCCTTGGTCATATTCAAAGATTTAGAGTTTATTAATTTAATTGATCTATTAAAATTTACAAACACAAAATTTATAATTTTAACTACTGATTTTACTAAATATATAAATAAATATGACCAACTGGAGCTTGTTGGCTTTTATGAAAATAAAACGATTATTGATATCAAAACACCATTGCCAATTATTAGCTATTTTGAAAATCATAAAAATAAGGAAATTCTAGAAAATGAACCTCTATTTTCAGATTTAAATGGAAAAAATGAGTTTCGTTTTCACATTAACATCATCAAAAGAACATTTTTTGAATAAAAAAACTCAAAAACAACTAGTTTTTTGAGAAAAAAACAAAGAAAATCAGTTTTTTTCTTTGAAATGAG # Right flank : AAATACTCAAAAACCCAGAATTTAAGACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTATTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //