Array 1 423887-425439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHK01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain MALTAb isolate H175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 423887 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 423948 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 424009 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 424070 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 424131 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 424192 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 424253 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 424314 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 424375 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 424436 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 424497 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 424558 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 424619 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 424680 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 424741 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 424802 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 424863 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 424924 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 424985 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 425046 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 425107 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 425168 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 425229 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 425290 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 425351 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 425412 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441572-442211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHK01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain MALTAb isolate H175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 441572 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 441633 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441694 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441755 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441816 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441877 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441938 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441999 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442060 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442121 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 442182 29 96.6 0 A............................ | A [442208] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //