Array 1 453980-455472 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMF01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 453980 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454041 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454102 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454163 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454224 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454285 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454346 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454407 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454468 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454529 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454590 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454651 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454712 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454773 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454834 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454895 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 454957 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455018 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455079 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455140 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455201 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455262 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455323 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455384 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455445 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471604-473629 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMF01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471604 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471665 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471726 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471787 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471848 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471909 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 471970 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472032 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472093 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472154 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472215 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472276 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472337 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472398 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472459 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472520 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472581 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472642 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472703 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472764 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472825 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472886 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472948 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473051 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473112 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473173 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473234 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473295 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473356 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473417 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473478 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473539 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473600 29 96.6 0 A............................ | A [473626] ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //