Array 1 18-3613 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCY01000042.1 Moraxella catarrhalis strain 3476642E 3476642E_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 18 28 100.0 32 ............................ AAGGTATCAGCCCACCAATCGATATCTGAGCG 78 28 96.4 33 .....T...................... ATAATTCCACCATTCGGTTTCTTTGTCTGAGTC 139 28 100.0 32 ............................ TCTGGTTGGTATTTTACATCAAACCCTTTAAT 199 28 100.0 32 ............................ TTTTAAACCTGCACAGAACAATGAAAGACCGA 259 28 100.0 32 ............................ TGTCGCTCATTTGGCGGTGTCCACTCGCCCCG 319 28 100.0 33 ............................ ATAAATTCACTGCACTATCTATCAAGTTTTGTA 380 28 100.0 33 ............................ ATTCATTTTCTTGTAAATCTAAAAATATTTTGA 441 28 100.0 33 ............................ GTTACAGCAAGTTTGACAACATCAAACGGCTCA 502 28 100.0 32 ............................ TACTTGTCTATCCAAAATCAGTTTATACGCTG 562 28 100.0 33 ............................ CCAAGACCCCGCTATGCCGCCTCAGCAGTTTTT 623 28 100.0 32 ............................ ATCGTACTCCCGACGTTCTACCCAGGAATTAT 683 28 100.0 32 ............................ TCTTTAAAGACTGCCCCTTTTTCACTTAACAG 743 28 100.0 32 ............................ TTGTCTGCGTCTGGATGTCTATATTTGACTCT 803 28 100.0 32 ............................ AGCATTTTCAGGCTTTGAAAAATATTCAAGAT 863 28 100.0 34 ............................ CATTCTCTGTATTCGTTCATATCGCCCCCTTGAT 925 28 100.0 32 ............................ TTAGGCAGTAAGATGTTACAGATAACATAAGC 985 28 100.0 32 ............................ ATCTATATAATCTACAATGACTTTACCTGTGT 1045 28 100.0 32 ............................ AAAGTATTCATCCAGGGTGTCTACATGATTTA 1105 28 100.0 32 ............................ GTGATATTAACGCTTTGCAAGCTGATAAAAAT 1165 28 100.0 32 ............................ AATTATCATCCAGAAAAGATCTTCTTTAGAAA 1225 28 100.0 33 ............................ AGATGACCAACCACCGCTTGCCAAATTTTCCAA 1286 28 100.0 33 ............................ GTTATCAACGACAGCATATTTTTGGCGGTTGTA 1347 28 100.0 33 ............................ AGTCAAATTCACCACGCCAAACACCGCCATCAT 1408 28 100.0 32 ............................ ATTAACCCTAGCTCTATCGCCGTCAATTAGCA 1468 28 100.0 32 ............................ GTCATAATGTTTCATTACTGCAAGTACTAATC 1528 28 100.0 32 ............................ TTTTAGGCAAGGCGTGAGCCTTTTAGGCAAGG 1588 28 100.0 32 ............................ CATACTCGCTCATAAGCTTCAACCCCTGCTTA 1648 28 100.0 32 ............................ TGTAGTAGAAAGTTAACTACAGAACGCTAATT 1708 28 100.0 32 ............................ TAAACTCTACTACTCTGCTATCGTGATAATAG 1768 28 100.0 32 ............................ ACTTTCAAGCCTGCACAGAAAAGTGATAATCC 1828 28 100.0 32 ............................ TTTAGTGTTATGCTCATTTAATTCCTCAAAAA 1888 28 100.0 33 ............................ GTCATACTCCCTTCTTTCCAACCAAGTATTGTC 1949 28 100.0 32 ............................ CATAACAACGGATAAAATAATCTTTGTTGTTT 2009 28 100.0 32 ............................ ATAGTCTCATATGATATTTCTTGTTTTAGTTC 2069 28 100.0 32 ............................ CCGTACTTCACAACGTATTCTTTTGCTAAAAC 2129 28 100.0 32 ............................ AGTGGAATAGCTAATGCTAAAGCGTGTTTAAC 2189 28 100.0 33 ............................ AATCTGTATAACCATACAAAGCTTGATTTTGCA 2250 28 100.0 32 ............................ AACATCCGCAAGGATTGGGCGGATTGCACAAA 2310 28 100.0 32 ............................ TTTTCATTTCATTGTCAAGAGTTTCTTCAACC 2370 28 100.0 32 ............................ TTGATCCCTAGAGATTTTGTGCATCTCCATTA 2430 28 100.0 33 ............................ AACATAACTAGTCTCCTTAAATTTCAATTAGTA 2491 28 100.0 32 ............................ TAGATACTGCATAGGATTAAATTGTTTCATGT 2551 28 100.0 32 ............................ TAAACACCTGATTCTAGAATTGTAAAGCCACC 2611 28 100.0 32 ............................ CTTGCAGGGGGCTGAAAATGCTGATATATGTT 2671 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 2731 28 100.0 31 ............................ TTGACCCCCGCCCACTAGCCCCAGTTGTGAG 2790 28 100.0 32 ............................ ATGACAGAGAACGGTTAAGTACAACGGCAATC 2850 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 2910 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 2970 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 3030 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 3090 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 3166 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 3226 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 3286 28 96.4 32 .............T.............. AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 3346 28 96.4 32 .............T.............. GACGCAAAGATTGCAATCAGATAAAACAAAAA 3406 28 92.9 32 ...........TG............... TAATCTTGAACCTATTTCATAAATAAACGGCT 3466 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 3527 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 3586 28 92.9 0 .............T....T......... | ========== ====== ====== ====== ============================ ================================================ ================== 60 28 99.4 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTGTATGCGTGTGACTCC # Right flank : ATTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //