Array 1 168-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWK010000056.1 Synechocystis salina LEGE 06099 06099_allk2_56_len:19618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 167 37 100.0 35 ..................................... GATTCCACAACGACCACGCAGTCTTTACCAAACGG 95 37 100.0 36 ..................................... GAGAAACTGAATGGAGCGTCCTGCTCCCAAAGCAGG 22 22 59.5 0 ......................--------------- | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 86.5 36 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Left flank : AAAATGCTTTATTTGATTATTTATGATGTTCCGGCTACAAAGGCGGGCAATAAACGACGAACTCGTTTGTTTGATCTGTTATCGGGCTATGGCAAATGGCGACAGTTCAGTGTGTTCGAGTGTTTTTTGTCAGTCAAGCAGTTCGCTAAGTTACAAACGGCGATGGAGAAGTTGATTAAACTTGATGAGGATGCAATTTGTATTTATGTGTTGGATGAAAATACGGTGCAACGCACGATTACCTATGGGACTCCCCAACCAGAAAAACCTGGTAGTATTATTATCTAAGAAGTCATTCTTCAGATTTTGGCATACCTATAGCGAGGGCCTTTTCCCTGGGGGGTTTGCCAAATTGCTTCTGAACCTTGAAAAATCAATACTTTCACGCATTCAGACTGCGTACTATTTTGAAGGTCTGGCTAATTTTGGAAGGATATTCTGGAAGGTTTGCCAAAGTCTGCTTTCCTCCCCTTTCCCCGTAAGGGGTCGGAGGGGGCGGT # Right flank : C # Questionable array : NO Score: 4.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.33, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-D [Matched known repeat from this family], // Array 1 58-1322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWK010000124.1 Synechocystis salina LEGE 06099 06099_allk2_124_len:1387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 58 37 100.0 35 ..................................... GTTTAGGCGGATTTGTCCTGGATGCAGACCGGGAA 130 37 100.0 35 ..................................... CTCTCGGAATAAAACCTTTTCTGTTCTCATCAGAA 202 37 100.0 36 ..................................... GAGCGGGAAAACCCAAACTTGACTAAATAAATTATA 275 37 100.0 39 ..................................... CTCTTTTTCACCTAATTCTAAAAGCAAATCGAACCAATT 351 37 100.0 35 ..................................... CAATTATTTGCCGCCACCATGGCCGCCGGAGGAAT 423 37 100.0 37 ..................................... TCTAAAGAATAGTGATCAATAACAACGTCAGAATGAT 497 37 100.0 33 ..................................... ACACTTTGGGCTTAAAGCCAAAGCGTAATGCCA 567 37 100.0 32 ..................................... TTATTAAAATCTTTTGAGCAATATTTAGACAT 636 37 100.0 36 ..................................... CTAATCTATACTCAAGATTTCCAAGATAAATATTTA 709 37 100.0 36 ..................................... ATGGGATTGGCGATCGTTTGGAGCATGGATTCTCCA 782 37 94.6 38 AC................................... TTCCGATCGCCTACAACTCAAAACGGACAGGAAAAAGG 857 37 100.0 34 ..................................... GCCATTACGTGTCCGTAATCGCGAAAATGGAATT 928 37 100.0 38 ..................................... GCGGATAATCCAGCCTTGCTCCTGAAGGGCGATCGCCA 1003 37 100.0 34 ..................................... TTCCTTGGTTAAATTTTTGATTGATGCGGGCCAA 1074 37 100.0 35 ..................................... TCTCCCGGCCCCCCACTGGCAAACCGCAGAAGATA 1146 37 100.0 33 ..................................... ATTGACAAAGATTTGTTCTCAAGAATTTGCATA 1216 37 100.0 33 ..................................... AAGGAAAGGTTGATTCCGCATCAATCAAAAAAT 1286 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.7 35 CTTTCCTTCTACTAATCCCGGTGATCGGGACTGAAAC # Left flank : CCCGGTGATCGGGACTGAAACACGAGAACAAGACCACCAACGAGAAGGGCAATATTTC # Right flank : CTTCGCGTTATCTTTATCATGCCAACTCTGATGCCTTTCCTTCTACTAATCCCGGTGATCGGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTTCTACTAATCCCGGTGATCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-D [Matched known repeat from this family], // Array 1 1-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWK010000143.1 Synechocystis salina LEGE 06099 06099_allk2_143_len:1109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1 25 69.4 42 -----------......................... ACGGGTGCCGGAGGTGGGTCGGAGGGGGCAGTTACCACAGAT 68 36 100.0 47 .................................... CACTGTAGCGATCTTCCAACCACTGGTCATGGTCAGCTACTTTGGTG 151 36 100.0 40 .................................... ACAATCTTTTCACAAACTACTTGCATATTTATAAAAAGAA 227 36 83.3 0 .........A....................TTGGG. | ========== ====== ====== ====== ==================================== =============================================== ================== 4 36 88.2 43 CTCTCCACTCGTAGGAGAAACTAATAGATTGGAAAC # Left flank : | # Right flank : CCGCCCGGATCAGCTCAGCGTAACCCAGTTCCTCGTCCCCTTCTAGGGCATCAAAATTAATCACCTCCCCAAACTGTTCTAGTTCTCCTTCATCGGTGACCATGGTCAATTGCCCTGGTTTGGGATAATCGGCCATCTTGCCCCATCACTTATCCAGCGATAAAGGTTATCAAGTTCAGCCATTTGTTCACTGGACAAACTGAACGAATCATCAACTTTGTCCAACTTAAAGGAGTAAAAATCCAGCGGCTATCCGCCGGACAAATTGCCCTTTGCCAGTGGACAAAATCTTGTTTTCGCTGGACAAACAGTGTAAATGTCTAGTGATTTGTCTAACGCTCTTGTTGCACAAACTGGACAATTCTTCCTTAGTCTTTGGACTGTCCAACGCATCTAGTATTAGTTGGCGGACAACCTCACCTTGTTTATGGGTAGGCCACTCATTAGGGTTAAAGTCCATGGTGTTCTCCTTCAATAAGTTATCTATATTTTCTGATAAC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCACTCGTAGGAGAAACTAATAGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //