Array 1 438431-439216 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021484.1 Pediococcus acidilactici strain SRCM100424 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================================== ================== 438431 35 100.0 31 ................................... TAATTTAGAGCTGTATTTGAATAAGCACCCT 438497 35 100.0 31 ................................... TAGCATGTCGGCACTCGTCCCGCCTACCCGT 438563 35 100.0 31 ................................... CGTCTGGGGTTAAGATTGCGACTGTGTCGCA 438629 35 100.0 31 ................................... CATAACCTACCTCCGATACGTGTTAATCATT 438695 35 100.0 31 ................................... CGTTCCCACATGAGTGATTACTGGAATGCGC 438761 35 100.0 31 ................................... CGTTCAGTGTTGAGATTGTAGGAAATTGTTA 438827 35 100.0 31 ................................... CCAATATTAATATCTTCAATCCAATTGGACT 438893 35 100.0 31 ................................... CTTGCAATCGGAAAAGCAGCAGGTATTCCAG 438959 35 100.0 31 ................................... CACGATTTACCGTTTTAGGAATGATTTAGAT 439025 34 82.9 123 .......-..A...................GGC.A TGAAAAAAAGGGGAGTTTAATAATTAATGCTCATAGAGTTTAAATTTGGTATAATGCGAAATGGAATTTGAGAATGATTTGGTATTGGCGATTTACTCACAATAAAAATAAGTTGCTTTTATT 439182 35 94.3 0 .................................CG | ========== ====== ====== ====== =================================== =========================================================================================================================== ================== 11 35 97.9 40 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT # Left flank : CCAGGACTTAGTTATTCAAAAATATTTAACTAAGATTGAACGAGTTTTTGCCGAAGGGTTGGTGGATGAGCAACGTAACCAAATTCATGATCAGGTAAACCAACTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCATATGGTATAATTGAAGCGATTTTGAAGACTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCAAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : GTAGAGCTAAAAATCTTAGCTCAACGAAAAACGAAAACTCCTATAAGTTAATGATTACTTTAACTTATAGGAGCTTTTTGTAGTTAGAGAAGGATGTTAAATAATTGAATAATGCGTCTTATTGCGAGAGACAATAAACATTATTTAAAATTGAATACGAGAGTAACGTTAATTTTTGAACAGCTCTCAAAAAAGAAGAGTAGAAAGATAAGTTTGTTTGTAAAATTAAAGTTAAGCTTTTTTCTCATAATTTATGACTTCCTTTGTATTTGTTTTATAAATTTATAATAAAAGCAAAATTTCATTTTATCAAAATCATCAACAATTTTCGAAATTATTATACCCCATAAACTTAGAAATCACAATAAAATAAGTACAGCGACCTTATATTTTATCCAGTAGAACACATTAAATAACTGATATAAAGAAAAAACTACAGACAACAAAAACAGCCCAACCGAATCCCAATCCAGTCAGACCGTCTTAAATTTCCTACATCA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.82, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //