Array 1 31534-34984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHHG010000001.1 Deinobacterium chartae strain DSM 21458 Ga0415239_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 31534 36 100.0 37 .................................... ACGAACCCGCTCCCTAAGGGCGCGATGGACGCCGCGT 31607 36 100.0 37 .................................... ACCGTGCACCTGCAAGACCGTGTGGGCAGCCCAGCGG 31680 36 100.0 35 .................................... GGGGTCCACGTCGCGTTCCGCAACCCAGGGGATCA 31751 36 100.0 34 .................................... ACGTCCACCTTTGCCGCTCGTGACCGCCTCGAGC 31821 36 100.0 37 .................................... ATTCCAGCACACGTGACCTGCACGCGCCGGTCATCTG 31894 36 100.0 38 .................................... ACCGTGTGGCGCCGCTTGCCAGACGGCACCTTGAGCAG 31968 36 100.0 35 .................................... CCGTTTCATCGGCTTGGCTGGCGCATACGTTGCGA 32039 36 100.0 33 .................................... CTGGCCCTGCGTGGGCCGTGGTCCGCATGGCTG 32108 36 100.0 36 .................................... ACAGTCCACTACCGATTAGCCGCTCTTGCAGGCATG 32180 36 100.0 35 .................................... CTGCACAGTACGCCTGTCAAGCCTCGCAGTCAACA 32251 36 100.0 33 .................................... ACCCAATGCGGCACGCATGACGCGCCTCCGGGC 32320 36 100.0 36 .................................... CCGTGTCACCGGCTTGGCTGGCGGCATACGTTGCGG 32392 36 100.0 35 .................................... ATACGCCGGGCGGACCGCCACCAAACGAGCAGTAA 32463 36 100.0 35 .................................... CTTAGCTGCTGCTGTGCGTCTGGGACAGTGGTAGT 32534 36 100.0 35 .................................... GCTGCGTCGGTGGCTAGGTGCGTTGGATAGTCGGC 32605 36 100.0 36 .................................... TGCCTAGCGCAGTCTTAACAGCCGTGAGCTAGAGAC 32677 36 100.0 36 .................................... AATCCACCGTGCAGGCTATGGCACGCCATCGCACGC 32749 36 100.0 36 .................................... AAAGAAGACAGATTAACTTTGTTGCGAAATTGTGGG 32821 36 100.0 34 .................................... AAAACATTTTCGAAAATGCGGTTATCGTTGTTGG 32891 36 100.0 35 .................................... TCGAGCCGGTCTATCTCCCACTCGAGGTTGATCAC 32962 36 100.0 36 .................................... CGTTACTTTTCCGAGTTTCTTAGCATTACGACTGAG 33034 36 100.0 35 .................................... TCACCGAGGAGGATGTAGCGGTTGCCGAGGGCCGC 33105 36 100.0 37 .................................... ACAAGTGTACTGTGCAGGAGCCCTGAGAGGGGCAGGG 33178 36 100.0 34 .................................... GACCTTGCCGACTTGCGCGATAAGCGCGTTGCAG 33248 36 100.0 37 .................................... ACAGGTGTACTGTGCAGGAGCCCTGGAAGGGGCAGGG 33321 36 100.0 34 .................................... AAGAACGTGCGGCTATCGCGTATGAATGCACGAT 33391 36 100.0 32 .................................... AGTGCCTTTCCGAGCGTCCGGGGTCCAGCCGG 33459 36 100.0 35 .................................... TACATTGTACTGCTTAGCTGTCTGGCACGGCATTT 33530 36 100.0 35 .................................... AAACGCTGTAGCGGTTGCCCTGGCCGTCCACTGCG 33601 36 100.0 31 .................................... CCCTCGAGTGACTGTAGTATATATCAGCGCG 33668 36 100.0 36 .................................... GTAATTAGTGGGTTCGTCGGTCATTACTTGGCTCGA 33740 36 100.0 36 .................................... AACTGAGGATGATGTGGCCTACGCCGAGGGCCGCGC 33812 36 100.0 36 .................................... GGTACACAGTCGATTAAATTAACAAGCGGCAAAGTA 33884 36 100.0 35 .................................... GCTGCTGTGCGTCTGGGACAGTGGTATAGGCTGCG 33955 36 100.0 35 .................................... GCCCACGCGGAAAGTGCTCAGTATCCCCATCACGT 34026 36 100.0 37 .................................... CGCGTGTACGCCCACCTGGTGCGCCGGGCAGGAAAGG 34099 36 100.0 36 .................................... AACATCACCATGGGACTTAATTACTTCTACCCAGTA 34171 36 100.0 33 .................................... CTCGCCCGCGTCCCCCTCGATCAGTACGCTGTC 34240 36 100.0 35 .................................... CTAAGATACGCAAGTTTGACGTAACGGCCAATTAC 34311 36 100.0 34 .................................... CTCACGAAATACCTAAATGCTCCAGGTCGGTTAG 34381 36 100.0 34 .................................... GAGGGCCAGGGCAGCAGCAGCCGATTCGACCTTG 34451 36 100.0 33 .................................... GAGACGGGCGACCCCAGCAAAATCAAGGCGGGC 34520 36 100.0 38 .................................... ACGCATGCGGAAAGTGCCCAGTATCCCCATCACGTTGG 34594 36 100.0 36 .................................... ATGTTGCAGGACCAGGCCACCCACGAGATGCTAACC 34666 36 100.0 35 .................................... TCTGTGTGTGTGATACGGTACGATTGCCAGTATTT 34737 36 100.0 35 .................................... ATGGGCTGCAACCTACGCCCGTAACCCGTAACCGC 34808 36 100.0 35 .................................... TATATCTCGCATCCTCAGGAGGTGAGGGCGAAAAT 34879 36 100.0 34 .................................... TCTAGCAGTGTAATCCACAGTGTCTTTAACGTTG 34949 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 49 36 100.0 35 GTAGCGCCCGGCTTCGTGCCGGGCGAGGATTTGAAC # Left flank : CGCACTACCCGCCGTACGTGGCACAATGATCGACGTTCTGATCACCTACGATGTTGCCACCACAGATCCGGAGGGAAGGCGGCGGCTCCGTCAGGTCGCCAACATCTGTTGCGGTTATGGGCAACGCGTGCAGCTCAGTACCTTTGAATGCCGAATCAGCCCCTCCCAGCTTGAAATCATGCGTGCCCGACTGTTGGACGTTATCGACGTGCAAAGTGACAGCATCCGAATCTACCGGCTGAGAACTCCTCGTGATCGGTACGTCGAGGTGCTTGGTTCGGATCGCTTTCAGGATTTCAGCGATCCTTTGGTGCTGTAGTCTTCCGCGAACCTCCAGTGACCGGAAAAATCCCGTAAGGTTCGCGCTCTACTTTTTTGTCGTTGCAGACGTGCAGCTTGAAAAACAGTGCTCGATATGCCCCCCCTGGGAGAAGCTGACTGGGTTGGTTCGCGGATTGCTGTTGATCATGAACGTTTGAGACGTGGTATTCTGTGAAGCC # Right flank : CCGGACCATCCGAGTCCGCTGATATCGCGCTTTGGGAAACACGCGCTGCTCGGTTCGTCGTGGGGAGCGGTCAAAGAGCTGCGTGCCGACTGGCCGGAGCACGCGGTGGCGGCGCGTGCGCGCAAGAAAGTGCGAGAATTAGGTCATGGACAAGAAGAAGCGGGTGCCGTGGCCGAAGCCGGACCTGAACCGTTCCGAACCGCCGTCCGACGTGGCGGCTGAGGGAATGGATTCGTCGGGTTCCAACCTGTTGTTTTTTTCGGATTTTCTCGATGAGGACGAAATGGAAGAGATTCGTGAGTTGTTGGCGCGGAGGGACAAAGCGGACCGCTGAAATGTAAGCGGTTTCGCTGCGAAACCGTGCAGGAGCGCTCCGCGCGCTTGCCTGCACGGACCTTTTATGTATTCGGGATTCGTATAGGCAAAGCCTTCATCTGGCATGAAGGTGCCTACTCAGCTCCGGCGCTGGCCGTAGCGCCTGGCTTCGTGCCAGCGAGGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGCTTCGTGCCGGGCGAGGATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.90,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 5325-3893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHHG010000019.1 Deinobacterium chartae strain DSM 21458 Ga0415239_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5324 29 96.6 32 ............................T CATGGGGATGTCGTCGTCGCTGAGTCCTGCGA 5263 29 100.0 32 ............................. AAGACCGAGGGTGCCATCAAGGCCTTGGTGGA 5202 29 100.0 32 ............................. GCGGTGTGTCCGGCGCGCAGTGCAGCTTTCGC 5141 29 100.0 32 ............................. TCCCAGGGGTGGGTTTGATCATCCCTCTCGTA 5080 29 100.0 32 ............................. TGGGTCAAACCCTGACGCCTACCCTGCTGCAA 5019 29 100.0 32 ............................. TCGTTCAATGCTGCAATGACATGGTGTAAGGA 4958 29 100.0 32 ............................. CCTTGGCCGGCTCCCCCCGTTAGCGCCCATAT 4897 29 100.0 32 ............................. AGAACAAGTCCTACGTCGTGGATCAACTCATT 4836 29 96.6 32 ............................T TTCGCGGTGGCCGGGGCTTTCAGGACGGACAG 4775 29 100.0 32 ............................. GCGTACACGCAGATCGCTAACGGAGCGCGCGC 4714 29 100.0 32 ............................. CCGTGCTTGCGGAACACGACGGGCGTGAGGGT 4653 29 100.0 32 ............................. TTCATCGTCGGCCTCGAGGAAGGGGACCTGTG 4592 29 100.0 32 ............................. GCGGGCTGGACGTCAGCGATGAAGGCGCGGAC 4531 29 100.0 32 ............................. AGCTCCGCAAGGACTTGTGCGCCCCTACGTAC 4470 29 100.0 32 ............................. TCGTGCGGGAACGCATGACCCTCACCCGGCAA 4409 29 100.0 32 ............................. GGCCTCAACACGAACGCCCCGCGGGGCATCAC 4348 29 100.0 32 ............................. GTTTTCTAGAATAAGTACGACGAACTTCCGCT 4287 29 96.6 32 ............................T GGGAGTCTTTAGTTCGTGCATGGAGCCTCCTG 4226 29 96.6 32 ...........G................. GGCACGAACGCATGTGGCGGGACGCGATGCGA 4165 29 100.0 32 ............................. CGAGTTCGCTCATTCGCTGGTAGATGCCGAGA 4104 29 100.0 32 ............................. ACCCTTGAGCTCCGGATGCAAAAAGCCGTGAG 4043 29 100.0 32 ............................. TATTTGATCATCGCCGCGTGCAGCGCCACCCC 3982 29 100.0 32 ............................. GTGCACGAAGGCAGGCAGGATGGCGGGGGTCT 3921 29 89.7 0 ..................T........TT | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.0 32 CTCTTCCCCACACGCGTGGGGGTGACCCG # Left flank : CATGGTCAGCGACCTGCACGCCCTGATGGACGCAGACCCCAACGAAGACGAAACGGACGCTGCCGACCCCGGCGAGCTGTGGGACCCGGACGGCAACGTCCCGGGAGGTGTGGCATATGACGGTGATCGTCCTGGAGAGCGTGCCGACGAGCCTGAAAGGTGAACTCAGCCGCTGGCTCCTCGAGGCCAGCACCGGCGTGTACGTCGGGCAAGTCAGCGCCCTGGTGCGCGACCTGCTGTGGGAGAAGTGCGTCACCTATGCCCGGCGGGGCCGCTGCACCCTGCTCTACCGCACCAACGGCGAACAGGGATTCGCCATACGCCTGCACGGTGACCGTACCCGAACGGTCTTGAACTTTGACGGATTGGACTTGATCGGGGTTCAAGACGCACGCTGGGCCACGTACCTCGAGGAGGTGCAGGCCCGGGAAGATTGACAACCGGATACTTCCAGATACTTCTCGAGGGTCAAGCAGGGTTTTTTGTCGTGTTTCTGAAGT # Right flank : TCGGTCAACCGAACGGGGGTAACAGTGGGCCTTATCTCCACCCGCCACCTGAGACGGCGGGCGCAGACAAAACAAACAGCAGAACTGTCAATAGCGGACGGCGGTCCTCAACGGAACGCGTGGTATCCGGGCAAGCCAGCTGCCCAGGGCCACAGCGGCGGCAGGCAGCAGCATCCACAACCACATCAGTGGGGAAAGCCCCGGCTCGAGCAGCGCGTCCTCTGGGCGACTCGGGTCGTAATGCACCCGGACCGGCTGCCCCAGCGGGTAACGCTGCACGACGGTCTCGGCCAGCGCGCGGTCCGACCACGACGCGGCCATGTATCCGATGCGATTCCCCTGACGGGAGGTCCCCTCCACCGCGTACGTGTAGGTCACCCTGGGCTCGTACATCACCTCGAGGTCGCCGTCATCGTCGCGTTCCACGTGCTCCACGATCTCGCTGTACACCACGGTGCCGGTGGTGGTGGGCCAGCGCGCCGTGAGGGTCGCGGACGCGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCACACGCGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 17311-19230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHHG010000019.1 Deinobacterium chartae strain DSM 21458 Ga0415239_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17311 29 100.0 32 ............................. TGCTGACCGATCAGGACATCCTCGCGAACACC 17372 29 100.0 32 ............................. ACCCCACGAGGTGATTTATGACCCGACCCGCC 17433 29 96.6 32 ............................T TTGACGCACACAAACGCGCCCCGGTTCGCCGG 17494 29 96.6 32 ............................T TGTGCCAAATTGTCAACACTCCCGCAGCACCC 17555 29 96.6 32 ............................T GGTTTTGCCGCCCCGAGTAGTGACCTACCGAG 17616 29 96.6 32 ............................T GCAGCACAACCCAAAACACCCTCAGGAACGCC 17677 29 96.6 32 ............................T ACGTCCTGGTCGGCTTCTGGTTTGTTCCCTGC 17738 29 100.0 32 ............................. GTCACTCCAAAAGAGAACGCCCGGCTGGACCC 17799 29 100.0 32 ............................. GACCGGCACGGCGGCGTCAGCAACCCGTGCGC 17860 29 100.0 32 ............................. TCGGCCTCGCTCAGGTTCGCGCGGCAGAAGTC 17921 29 100.0 32 ............................. ATGGTTGTGCCGTTTGATAGGCGTATCTATCG 17982 29 100.0 32 ............................. CCCACCACGACATCCTGCCCGGCACACCCCCC 18043 29 96.6 32 ............................T CCGCCAGGGGTGGGGACACCATCAAAGTGCCC 18104 29 100.0 32 ............................. CAATCTCGTGTTATGAAGCCCCCCTCGAGAGG 18165 29 100.0 32 ............................. GTCGTCAACCTGTTACGGGGGTCTGGGGCATG 18226 29 100.0 32 ............................. TTGGCGAGCGTGAGGGTCAGGCGGCGGTCCTC 18287 29 100.0 32 ............................. GGACGGACCTAGACAGGAGCACGTATGCACGG 18348 29 100.0 32 ............................. CGCGGCTGGACGCCGACACCGACGCGCAAGCC 18409 29 100.0 32 ............................. CGCCGCTCACCGAAGGCCGCTGGCTGGTGATG 18470 29 96.6 32 ............................T TTTGGCCGCAGCCTACCGACCGGACATATACG 18531 29 96.6 32 ............................T TTGAGCGCCCCGGCCAGGCGTTGTGCTAGGCA 18592 29 100.0 32 ............................. ACCTGAGACGCATCGTGGACGCCTTGCAGGAA 18653 29 100.0 32 ............................. GCCATACTGTTTTATTGCCTCTGGCGCGACGC 18714 29 100.0 32 ............................. GTCGAAGTTGCCCCCGAAAGCGGCACCACTCC 18775 29 96.6 32 ............................T CTCGGATATGTACCTAATCCCCGGCTCGCACC 18836 29 100.0 32 ............................. TGGAACCTCTGGTCACCTCGGATGGTTAGCAG 18897 29 96.6 32 ............................A TCAATTTCGGCATCCAGGCTCTGGCGGTGATC 18958 29 100.0 32 ............................. CGTGGACCCCCGCCGGGCCGCCCCTGCAGGCG 19019 29 100.0 32 ............................. CTCGGATATCTGGTGCGGGCGGTGTCGCAGCC 19080 29 96.6 32 ............................A CGGTACGACTCGTCCGCCTGCTGCCCCAGCCG 19141 29 93.1 32 .......T....T................ TCGGCCTGACATGGATGATTCAGCGGCCATCG 19202 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.6 32 CTTTTCCCCACACGCGTGGGGGTGAACCG # Left flank : CGCCCTGCTTTCAGCCGCCGCTGGGAATCTCCGGCGGATCGCCCGCTACCGTCACCCCGGCGCTCCCGATCCCGCGGGGCGCACCCGAAACAGCCACCGCCCCAAACAGCACCAGCACCAGCAGCCCAAACTGCGCGCCCCAGACCGCCCGTTTTCCTTTACGCATCCCGACCTCCTCGAGACAGGCGCGACCCACCGTCCTTCCCCCAGGGGAGGCCGTCAGAAAATGCGCGCCTGGACGCGAACTTTTGCGTTAGCGTCTGCGTGAAAGGATGCGGTCACATTCCGACAACGGCTGTCGGTTTACAAAACCGCTTTCTTTGACTCGGTTCAGGTATGCGGCCTGTGGGGTGCGTAAACCCGAGGCAACCCCACCCTGCTCTTGCATCCCGCCTGTTCTTGCGCCACACTGGCGGTGGTTCTGCCAGGAAGCTTGACAACCGGATACTTCCAGGTACTTCTCGAGGGTCAAGCAGGGTTTTTTGTCGTGTTTCCGAAGT # Right flank : GTGAGAAAATCAAACCGTGACCCGTAAATCCGACCCGGCGGCCCACCTGCGCGAGCTCGCGCGACTGCGCCGCGTCCGCGACCGCATCGACCGAGAGTACGCGCAGCCTCTGGACCTCGAGGCGCTCGCCCGCAGCGTGAACATGTCGGCCGGACACCTCAGCCGCCAGTTCAAGCAGGCGTACGGCGAGTCACCCTACGCCTACTTGATGACGCGGCGGATCGAGCGCGCGATGGCGCTGCTGCAACGCGGCGATCTCAGCGTCACCGAGGTGTGCTTCGAGGTCGGTTGCTCGTCGCTGGGGACCTTCAGCACCCGTTTTACCGAGCTGGTCGGTGTGCCGCCCAGCCTCTACCGGGCTCGGGCCGATCACACGCCAGCGGGGATGCCTCCTTGCGTGGCCAAGCAGGTTGCCCGACCGATCAGGAATCGAGAAGCGCGGGGCAGCAGGGTCCGCGTACAGTGAGGGCCATGGACATCACCATTCACCAGACTTTTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //