Array 1 298-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYR01000038.1 Xanthomonas fragariae strain ICMP 4019 isolate ICMP 4019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 297 28 100.0 32 ............................ TTCGCGGGCTAACGTCGGCATAGCAGCAATGA 237 28 100.0 32 ............................ AAGGCGTCACGCCCGGAACGCTGATGCCGTTG 177 28 100.0 32 ............................ ATCACGGTCAGTACGGCACCGCCGATCGCTGC 117 28 100.0 32 ............................ ACAAAGCGCGATGCACCGCGCTGGGAATCTCC 57 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAGTACCAGGGCAACGTCCAGTGCGCATGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1671-622 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYR01000384.1 Xanthomonas fragariae strain ICMP 4019 isolate ICMP 4019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1670 28 100.0 32 ............................ TTCGCGGGCTAACGTCGGCATAGCAGCAATGA 1610 28 100.0 32 ............................ AAGGCGTCACGCCCGGAACGCTGATGCCGTTG 1550 28 100.0 32 ............................ ACGATGCTGCCGCTGGTGCCGAACACGTAGGC 1490 28 100.0 32 ............................ AGGAAGATCGCCAGGAGGACCAGGACGGTGAC 1430 28 100.0 32 ............................ GTCCTCATCTACACCACGCATCCCTACATCGT 1370 28 100.0 32 ............................ ATGAGCGGCACCGCTCAGATAGGCAATAACAC 1310 28 100.0 32 ............................ GTTGCCGGGTTGCCCGGTGTATAGCTCGATTG 1250 28 100.0 32 ............................ ATCACGGTCAGTACGGCACCGCCGATCGCTGC 1190 28 100.0 32 ............................ ACAAAGCGCGATGCACCGCGCTGGGAATCTCC 1130 28 100.0 32 ............................ AATCACGGTGTGGTAGGTGTCGATGTGGGAAA 1070 28 100.0 33 ............................ ATGGTCATTGCGATCAACCTGTTTACGTTCTTC 1009 28 100.0 32 ............................ GAAGACGGCAGTGTCATGCAGTTGCAGCAGAT 949 28 100.0 32 ............................ CTTGTATTGGGCTGTGTCTACTTGAATTGAAG 889 28 100.0 32 ............................ AGTACCAGGGCAACGTCCAGTGCGCATGCAAT 829 28 100.0 32 ............................ GCTAGCGCACTGACCATCACCAGGGAGACAGG 769 28 100.0 32 ............................ ACCACAATGTTAGAGGTATCGATCCACTGCAC 709 28 100.0 32 ............................ ATTGCGTCATGATCACAGCATCGCCGCCATTC 649 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGTCAGGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //