Array 1 2604005-2602369 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072384.1 Arachnia rubra strain DSMZ 100122 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2604004 36 94.4 37 .TT................................. CTCACCGCATACTCATACAGCTCCTGATCATCGAAGC 2603931 36 97.2 36 C................................... ATCAATCCTGGCAGGCGGGGTGGTTCTCTTCATCGC 2603859 36 100.0 36 .................................... CACGTCCTCCGGTTCATGCCCCGGCCGCAGATACCT 2603787 36 100.0 38 .................................... AAGATAGCCCCTTTGTTGATCAGCCACGCGAGGAGCAT 2603713 36 100.0 38 .................................... CAGGCACCCACGACCTCGCCAACCTGCATCAGCGGCCT 2603639 36 100.0 34 .................................... TCGAAATCACCGCCAGCCACATCTGGTACATCCG 2603569 36 100.0 37 .................................... TGGTCACGCCACACATCAACCGCCACTGACCAGCCCT 2603496 36 100.0 34 .................................... TCGAAATCACCGCCAGCCACATCTGGTACATCCG 2603426 36 100.0 36 .................................... GATCAACTCGATGTCACCGACCTGGGACGCGGCCGT 2603354 36 100.0 37 .................................... CCATCGAAGTCCAAACCTACTTCGTCCAGGATCCTCG 2603281 36 100.0 36 .................................... GGCCCTCACCGAAGAGGTGGTGACCGAGGCCATCCA 2603209 36 100.0 38 .................................... TCCCGTCCGACCGAGTCCTCCAGCCAGAGTGTCCAGTC 2603135 36 100.0 38 .................................... TCCCGTCCGACCGAGTCCTCCAGCCAGAGTGTCCAGTC 2603061 36 100.0 37 .................................... GAGCCGCAGCATGCCATTCCTTCGCGTTACCGAAATG 2602988 36 100.0 36 .................................... GGACGATCCATCCTCGTCCACGGCAAAGGCGGACAC 2602916 36 100.0 37 .................................... TCGCCAGCATCCGCCGTCAGCAACACCGACTCGTCTC 2602843 36 100.0 38 .................................... CAGAGCTGGCTACCTACCTCGCCAAGTTGCAGAGCCAA 2602769 36 100.0 36 .................................... GCGGCCCGAGGTATCTCCAGGAGTCGGTCCCGATGG 2602697 36 100.0 39 .................................... GGCCAGCCACCCCACTTGACTAGCAAACCTTGTTTACGT 2602622 36 100.0 38 .................................... CCGACCTCCTCCAGGGGGAGTTCTCGTGGGTGTGCGAT 2602548 36 100.0 36 .................................... CTACAACGTCAATGCCGAAGTCGAGCGTGTCCTGCT 2602476 36 100.0 36 .................................... CGGCAGCAACTCCCCGCTATGGTCGCGCAAGACCCG 2602404 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.6 37 GCCGCAATGGAGCCCAGCTTTTGGAGCTGGGAAAAG # Left flank : CCCTGCCGGGTAGTGTGCATGATGCAAAGGCCATCAAGGAATCCGGCTTCCTCGCAGCCCTCGACAGTCAAAGTCATATTGGAGACAAAGGCTACATCGGATTGGGGATGATCACCCCCGCGAAGAAACCCGCCCATGGTGAACTCACCGACAGCGACAAAAGAAACAACACGACCATCAACCGCGTCCGCTACCTCATCGAACGTGTCATCGCGAACGTCAAAACCTGGCGTGTTCTACACACCGATTACCGCCGCCCCTACAACACCTTCGAAACCACAATACAAGCCGTCACAGGACTCATCTTCGCCTACAGTCTATGAATAAGCCTCCTAATATATGCTGATCTGGGAAGATTCATGTCCAAGATTCGATATTAAGTTAGAGTCGATGTTCAATTTTTGAGAATGCTGAACGGGGAATATATAAAACCCTCAACGGGTCCAGCTTTTATAGTTTAAAAAGATAGCCGATTGATTTATTTAGCGACAAATAAAATA # Right flank : AGCTCGCGATTTTTTCACCAACTGACTACCAGTGTTGCACATCTCTGCGAGCAGCGGAAGTTCTGGGGCAGACGAGTCGGGTTGTTGCTCCCTGACAGGCTTGGGAAACTCGCGTTGACTAGGGCGCGAGCGCTCCCCAGGGGGACGGAGGGCGCTGGAGCGCTCGCTAGACGATCTGCGGGCCTCGGGTGGGTAGCTCCTCGCGGGCTCCAACGAATATGAACCTGTCCTCACCGATCTCTCCTAAATCAACAATCACCACCGAGTCTACTGCTAGGTTCATAATTTCTTCTCCGGCTGATCTTAGATGGATCAGTTCTGACTTGTTGAGGTCGCAGATGAAGACGGAGTATTGGAGTCGTTCTCCGTGGGCTTCCATCAGTTTGCAGATTTGTCTGAGTCGTCCAGGATTACGGATGTCATAAGCCACTAGATAACGACGCCGTTGTGTTTTCATCGAGTCACCATCGCCGTGTATTGTTCGATTTCCTTGGTGAGGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCCAGCTTTTGGAGCTGGGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.30,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 2848620-2848365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072384.1 Arachnia rubra strain DSMZ 100122 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2848619 37 100.0 34 ..................................... AAGGGATGAGTGACAGGAGGGTGTCGGCGGCGTA 2848548 37 100.0 36 ..................................... CGTCGAACACGCGTGCGAATATCCGGTCGCCGCCAC 2848475 37 100.0 37 ..................................... GGACGGGGCCGTCATGGTGCCACTCCGGCCACACCGG 2848401 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 36 ATTGTTCCGGCCTCTTAGGCCGGACTCCATTGAGACC # Left flank : ACAGCTCGGGACGGTCGTGCCACGACCAGCAGGACACCAGAGTACCGTCGATGATGTACTGACGGTCCGGGTCGAGGTCCCCCACACTGGGCACCCAGTTCTGGAGGGCTTCGGCGATCAGGGGAGTGTAGACCGCCACCACTCGTGAGATGGTGGCTTGGGAGACTGTGTGGATGTCGGCCAGCAACTCCTGGGTGAGATTGTGCCGCAATATCAACACAGTGACCTGGATACAGCGGAACAAGCCCAGGACACGGGACCCTGCCGGGGGAAGGTTTCCGGAACGGGATGTGTGGATCAGTTCGCACAGGTTGAGGATCTGGTCACGGTCAAGGCTTGTGGTAGTATTCACGGCGGCGGCTTGTCTTTCATCTGAGGGTTTTCTTTCTGCATTTTGAATTATCTCAGATCGGGCAAGCCGCCCTCACATCCCCCTCGGGTAAAGTGTTAGCTGGGGAAAGCCAAAACACCCCTATGAATAAGCCTCCTGGTCTCCAATC # Right flank : AGGCTGCTCGGGCTGTGGCGGAGCGGTCCACGGAGGCATTGTTCCGGCCTCTTATAGCTCTCTTTAATCAAAATCCGATGTCTGTGGGGTATTCGGGTCGGCCGGGGGAATCGGGTTTCCCGGGTGGATGTGGTGGATATCCCGTCGGGTGTGTAATATCCTTGATGCGTGAAAACAGTTGAGATATCTCCAGAGGAATTCCGGATCCTCCAAGACTACAAACACGAGGGTCCCCACAAACTCATGAAAGGAAAAGCCGAAGCGATCCTACTGCTGTCACGAAACGTGGACATCGGGGTTGTGGCAGAACTCGCAGAACGCACCACCGCAACCATCAAAACCTGGCTACAGGACTGGCATGAAACCCGACTCGCGTCAATACACACCGGCCATGCTGGCAACCTCAACGCCTCCAAACTCACCCCCCAGCAGCGGGCAGAAACCATCGAGGTGCTGCAACAACCACCCGGCCAGCTGGGTCTACCCGCCGAGTTCTGGAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTTCCGGCCTCTTAGGCCGGACTCCATTGAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.40,-14.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 2849568-2850397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072384.1 Arachnia rubra strain DSMZ 100122 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2849568 36 100.0 36 .................................... TCGCGATCAGCAGGCGACGTTCTATTACTCGTTGTT 2849640 36 100.0 35 .................................... GGTAGTTCATGGGTGATTTTGGACCCCGGCATACG 2849711 36 100.0 37 .................................... CACCCTCACCCGTGCTCAAGAGATGCTCACCGACCTC 2849784 36 100.0 37 .................................... TCCAAGGATGGCCGCCACCGCCCCGGGAAGTAGGCCA 2849857 36 100.0 38 .................................... GGACAAAACTCTGGCTTGTGTACCGGCTCTACCGCAAT 2849931 36 100.0 35 .................................... TCGAAACCCAACTCGTGGTCCCCAACGTGCACCAG 2850002 36 100.0 36 .................................... CGGCTAGACCGGGGGGAGAACCGACAGTGAAAAGCA 2850074 36 100.0 34 .................................... CTGACCCTGGAATGACTTGGGCTGAGATCTCCTC 2850144 36 100.0 36 .................................... CGCAGCATCCCGAGCCACATGCGATTCTGTTTCTTC 2850216 36 100.0 37 .................................... CTGCCCAGCTGGCCGGCCAGCTGGGGATCAGGGATGA 2850289 36 100.0 37 .................................... GTCCCTTGATCGTTCCTGCCACGTCGAACGCTAGTAA 2850362 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 100.0 36 GTCTCAATGGAGTCCGGCCTAAGAGGCCGGAACAAT # Left flank : ATCGACGGTACTCTGGTGTCCTGCTGGTCGTGGCACGACCGTCCCGAGCTGTACTCAGGCAAGCACCACACGACGGGGGTGAACCTGCAAGTGGCCTGCACCCTGGCCGGACAGCTCGCCTGGATCTCCCCGCCCCTGCCGGGTAGTGTGCATGATGCAAAGGCCATCAAGGAATCCGGCTTCCTCGCAGCCCTCGACAGTCAAAGTCATATTGGAGACAAAGGCTACATCGGATTGGGGATGATCACCCCCGCGAAGAAACCCGCCCATGGTGAACTCACCGACAGCGACAAAAGAAACAACACGACCATCAACCGCGTCCGCTACCTCATCGAACGTGTCATCGCGAACGTCAAAACCTGGCGTGTTCTACACACCGATTACCGCCGCCCCTACAACACCTTCGAAACCACAATACAAGCCGTCACAGGACTCATCTTCGCCTACAGTCTATGAATAAGCCTCATGGTGACCAAAGCCGTCTTGGGCGCGAAAAACCT # Right flank : TAGCTCGCCTCGGAAGGCCACCTTGACTAAGGACTTTACCAGCACCTGCGAGCTCTCCGCACCGCCGGGTCCCATAAAACCACTCTGTTGAGTTGTCATGGGGTAAAACACCTAGTCAAACCCCTTCGAGCGCTCCCCGGGGGAGACGACATGACCGGAGGTCTCGCAGCGGCTCACACCACCACGGGCCCCTCATCGGGCAACCTACGCGGTACCCCAAGCATACTGATGTCTGCGTCTTGCGGGGCGCCGAGGTCGATCACCACCACCGAATCGTAGGCGAGTGCGATCACATCACGAATGTCCCGTTCCCACATTGCGAGTTCAGCCTTGCTCAGGTCACACACGAACACCGAGTACTGGAGCCACTTCCCGTAGCCCTTCATGAGGTTGAAGGTGGCTCGCAACCGCTTGGGATCCGATATGTCATAGGAAATGAGATATCTTCGTCGGGCCATGGGTCACCTCGTCATCAATGGGGTGTAGGAATCCAGTTCTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATGGAGTCCGGCCTAAGAGGCCGGAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.40,-14.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //