Array 1 6624-2638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOEZ010000009.1 Bifidobacterium adolescentis strain MSK.21.29 NODE_9_length_82457_cov_350.219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 6623 33 100.0 34 ................................. TCGACGATGCCGACTTGCGCCGTGATGCTCGGCA 6556 33 100.0 33 ................................. TTGGTGACGCCCTGCCAGAACACGTGGCCCTTG 6490 33 100.0 33 ................................. CTTTTCCTGCGGTATTCGCGTTTCCATTCGGCT 6424 33 100.0 33 ................................. GGCATGAATCTGCAGGAGACCGTCGGCGTTCTC 6358 33 100.0 34 ................................. TTCGCGGCGAACGCGCTCGACCATGTGGCGGCGA 6291 33 100.0 33 ................................. TAAATGGCCTCAAGCACGACATACGGCGACTGG 6225 33 100.0 36 ................................. CGCTCACATCTGGTTGTATTGAAACGTTTCGATGAC 6156 33 100.0 33 ................................. CGGTCATTAATGAGATGACTCAGCAGACCAATC 6090 33 100.0 33 ................................. TGGACGTGGTGGTGCTGGAATTATCAGACTTGG 6024 33 100.0 35 ................................. AACAACACATGTTTGACCAACGGTGTGAATCAGGC 5956 33 100.0 33 ................................. AGGTTGGACACGGTGTACTTCTGGCCGTGCGGG 5890 33 100.0 33 ................................. CACTTGGATTAGCGCACAGCCTCCCAGCAAAAC 5824 33 100.0 32 ................................. CCTCACGGCCATATCATTGTCGGAGTCAACCG 5759 33 100.0 34 ................................. GCTGATCGCGTCCGTGCGGTCGCTTATCGCGCTC 5692 33 100.0 35 ................................. CTAATCAAATCTTTCGCCATGTTCGCGGTAAGATA 5624 33 100.0 34 ................................. TTACAGGATTACATGCGGCAGTACGATTTACGAA 5557 33 100.0 33 ................................. ATCTCAGGGTCATTCAAATCAATCGGCGTCGAA 5491 33 100.0 35 ................................. CGAACGCAAAGCATGAAAGCACCCGCCCCGCCCGC 5423 33 100.0 36 ................................. AGCAGTGTGTCCGCTATTTTTTGACGTCGTGCGGGC 5354 33 100.0 34 ................................. GAGTTGGGAGTATCGGCGGAATCGGTTGAGTGGG 5287 33 100.0 34 ................................. AGCACGTTTGCTTTCATCGAATCGGTGAAGCCGG 5220 33 100.0 32 ................................. GGCTAATAATTGTTAAGGTTGACTGTCCACAA 5155 33 100.0 34 ................................. TATAGTCGGAATGAGTGGTGTACGAGCACGGTTA 5088 33 100.0 34 ................................. GTTTTGCGCAAGCGGGCATACCGTCCATATGTCG 5021 33 100.0 32 ................................. GTCAGGCGGCGGTCAGCAGCAGGTTCGCCGCC 4956 33 100.0 34 ................................. TTCATCAGTGTGTCGTCCATGAGATCCTCAGGAG 4889 33 100.0 35 ................................. GGAGATGAGGGCGAACCGGATGCCGACGGCGTCAG 4821 33 100.0 33 ................................. CCCTTGGCGACATGCCCGCACTTGTGGCAGGTC 4755 33 100.0 33 ................................. CTGTAAGGAGATGTAATGTGCTGCAAAATTTTC 4689 33 100.0 35 ................................. ATTAATCGAGTTTTGGTACTCTCGCGCGCACAACA 4621 33 100.0 35 ................................. TTCGGTGCTGAATAATCTATGGGCATGCCGCAGAG 4553 33 100.0 34 ................................. AGGCTGAACCATTTTACTACTGTACGACAGTATA 4486 33 100.0 35 ................................. CTACAATCCTACTACGGTTCCACCGTGAAAGGCCA 4418 33 100.0 35 ................................. AAAGACGACAAGACGCGTGATGCGTGGTTCGACGC 4350 33 100.0 33 ................................. TCATTAAGCACGTTGACGTCACCCATACGTCCA 4284 33 100.0 33 ................................. GTCTTCCATATCGATTTCACCGGCTGGCTGGCG 4218 33 100.0 33 ................................. TATCCCAGCCAGGACAACACCGAAACCCAGATG 4152 33 97.0 36 ..............A.................. CGTCTCAACGATCGGCACTGTGCTCATGTCCGGCCG 4083 33 100.0 36 ................................. TTCGGTATCGCGGTTCAGCATTTCAAGCTCCTTTTT 4014 33 100.0 36 ................................. TTCGGTATCGCGGTTCAGCATTTCAAGCTCCTTTTT 3945 33 100.0 36 ................................. TTCGGTATCGCGGTTCAGCATTTCAAGCTCCTTTTT 3876 33 100.0 34 ................................. CAGTTCGACGCCTCGTTAAACGGCAGTTCGACGC 3809 33 100.0 36 ................................. CCACGGCGGAGACGGTGAGGATCGCGCACATCAGCA 3740 33 100.0 34 ................................. AAGATGCTCAAGGGCACTAACGGCGAGCAGTTCC 3673 33 100.0 32 ................................. TCGATGGAGAACAGTGGGGGGTATCGACGTGC 3608 33 100.0 34 ................................. CTAATGGGGGTAGTCAATGACGGTGCATAAGGTG 3541 33 100.0 35 ................................. GGTTCCGTCGCCGCCCGCGGCAAGCTCCAGGGCGA 3473 33 100.0 34 ................................. ACCGTCACCGACGAAAGCGCCGACCACAAGACCA 3406 33 100.0 33 ................................. ATCGACACGGCCAAGTCCAGCGTCGGCGTGAAT 3340 33 97.0 34 ...................T............. GTCGGCATGGCGAACTTCGCCGGCCAATTGCAGA 3273 33 100.0 34 ................................. ATTTTGTGGCCTCCAGATATGGGTTTTCGCTTGT 3206 33 100.0 32 ................................. CTTTTCGAGGGCGTCAAGTCGTGCGGAAACGT 3141 33 100.0 33 ................................. CGCGTTCCATCGAAATTTTTTCGCAAAAGGTTT 3075 33 100.0 33 ................................. AGTTTCGCCCGATACGTTTCGTCAAAAATCGGA 3009 33 100.0 34 ................................. ATCGAGGTTTGAGCAACAGACGAACTCTGCTGTT 2942 33 100.0 35 ................................. GGCTACATCATCCCGAGCTGGCGTGATCCGCTCAA 2874 33 100.0 36 ................................. TTGATGGTGATCTCACCGAGCTTGCCGGTGGTGCCG 2805 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 2737 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 2670 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ==================================== ================== 60 33 99.8 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TGATGAGGACAGTCTGCGCTTTTATAAACTTGGCTCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACG # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //