Array 1 938-1443 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBGT01000029.1 Prevotella intermedia strain ATCC 49046 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 938 47 100.0 30 ............................................... CGACGTATTGATATTCCAAACGTCGCAGAA 1015 47 100.0 30 ............................................... TGGCAAGGCAATCTTCCGCTCGCTCCAAAT 1092 47 100.0 30 ............................................... CATGAGATCAAACATCTTTACTGGATGATT 1169 47 100.0 30 ............................................... GTGCAGAACGTCTACAAGCGAATGATGCAG 1246 47 100.0 29 ............................................... ACTTCTCGACTTCCTCCACAGACTTTAAC 1322 47 100.0 30 ............................................... TCGCTTTGAACAACTCTGCCTTTGCCGCTA 1399 45 91.5 0 ............................-.....C..-....C.... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 98.8 30 GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : CACTCTTACCGATCAGCCTCTGCTTACGGCTGTCCCAAAGAGATGGCGGAGTCTTGCACTTGGTGGAGAAGCCCGAATGGGTTCTGCCTACTGAGATGCGCCCGATGACAGGCACAAGTCCTTTCTTGTCGGTTCGTTTCGCCTGAACGAAGAACGATACTTTCAGTTTGTTTTCTTTCATTTTTTCTGTCGTTTTTTTTCTAAATTTCCTTTGCTTGCAAAGGTACAGATGAACAAGTGTTCATGAGCGATGCAGAAAAATGAAAGATGAGGAATAAAAACCTATGGCACAGATGTTTATCTTCAATTCGTAACCCCTTTTTGCTTTTTCCCTAATGGGTTACGATTTGGTAACGGAACTCCTGCCGTTTAATGCTCGTTCTTGCTTACCCTCAAAATAGCAAGAAAAAGCTAAATAATACTATTTCAAATAGTTACATTCCCTGCATTTCCCTGTGTTTCCCTTAATTCTTAATGACTGATTATGCAAAAAAAATAGA # Right flank : CTAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGGAAAGGGGAAAATAGAGAAAAAGAGAGAGGAAAAATAGGGGTGGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAAAACGGCTCTTTTACAGAGCGAAAAGATGATGATGGAGCGAAAAACATAGTCTATATGCGAACAAAAGTATTCGTTTTGCAACATAAAAGGTGTAATTTCGTTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTATGGTAGCACGCAAATAATGACGTTATTTGCAAATAAATAATTTGAAGTGCAGAAAAGTGCCCGTAATTCGGAAGTTGAGGCTTTGAAATTTAACAGTTGCGGAGTCGATTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 6919-10273 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ983262.1 Prevotella intermedia strain ATCC 49046 scaffold15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 6919 47 100.0 30 ............................................... AGGACGGAGGCTTGGACGTCCATTACGAAG 6996 47 100.0 30 ............................................... GAAAATGTTGCTGGAATCCTCACAATGGTA 7073 47 100.0 31 ............................................... CCGAAGCCTTGAACCCAAATATTTTGGGTAT 7151 47 100.0 31 ............................................... CACTCGAACGATAATTCGTTTAAGTTCAAGG 7229 47 100.0 30 ............................................... CCCACAGCGTTTAGCACCGCCCGTAGGAGC 7306 47 100.0 31 ............................................... CTTGACTTTGAAACACTCGAGGAAACAAACG 7384 47 100.0 30 ............................................... CCAAAAGCACCACTTACAAGTAAACCTAAA 7461 47 100.0 31 ............................................... CTTTCTTAATCTTAAACAGAAGTTCGAGGAC 7539 47 100.0 31 ............................................... CTTGCGGCAGAAGATTTAAATGTTTTTATTG 7617 47 100.0 31 ............................................... CTTACTATCACATTTTGTTTTTATAGCTTAC 7695 47 100.0 29 ............................................... GCTATCCAGCGTATTAGTTACACTATCAA 7771 47 100.0 31 ............................................... CTCTACCACGTTGTATTGGAAGTGGAAGAGT 7849 47 100.0 31 ............................................... CTGGGCACGGCGTCGAAACAGCAGGTAAGCG 7927 47 100.0 31 ............................................... CGTGGTTCAATGGATACTGAACTAGTAGATA 8005 47 100.0 30 ............................................... CTAACGTTATCACTGCAAATATACAAATAA 8082 47 100.0 29 ............................................... TATATTACAAGAACTTAAACAGCTGGGAA 8158 47 100.0 30 ............................................... AGAATGTCTTGTTGATGTCAGCCCAGTATG 8235 47 66.0 3 .....................CAG.ATG.CTTG.....C.GCC..GT ATG AT [8271] Deletion [8285] 8287 47 100.0 31 ............................................... CTTACCAGCGCATAAAGCTCACCCCTGAGGA 8365 47 100.0 30 ............................................... GCGTCATCGGATATATCGTTACACTCTTTG 8442 47 100.0 30 ............................................... CTCCTATAGCCAAACAACAGGAGCACTTAA 8519 47 100.0 31 ............................................... CCAAGATTATTTAAGATAGGAAATGTCTTTG 8597 47 100.0 31 ............................................... CGTAATAGGATTCAAAATACCTTTGGCAACA 8675 47 100.0 31 ............................................... CATTACTCAAATTATCGGAATCGTCAATAGC 8753 47 100.0 31 ............................................... CTCAGTATCTGCATCAAGATTGTGCACTTCT 8831 47 100.0 30 ............................................... CTTATTACTTATAGCTTTGTTTAACGCTCC 8908 47 100.0 31 ............................................... CCTGTTGCGCAGCATTAGAACTAACGTTTTG 8986 47 100.0 31 ............................................... CTCTCACAGCAGGAATACGAGGAAGCCGTCA 9064 47 100.0 30 ............................................... CTTCCACATAACGACAAATTGGTCGTAGTA 9141 47 100.0 31 ............................................... CATTCGTTGCTATGTGGAATGCTGCGAAGTA 9219 47 100.0 30 ............................................... TGCAGTGAAATTGAACGAATTGTTACCAGA 9296 47 100.0 31 ............................................... CCGAAAGAGCACCAACAGCACCGCTGACTAA 9374 47 100.0 31 ............................................... CTCACGCTTCGAGGTAACAGAAGCTTCTTCT 9452 47 100.0 30 ............................................... CTGTCTAATGAATTGACACACAAGCCGTTA 9529 47 100.0 31 ............................................... CGCCTTGTGTCCATCTTGTTTTCGTAGTCCT 9607 47 100.0 30 ............................................... AAAAATTCAAAGATTATGTACAACAACAAC 9684 47 100.0 31 ............................................... CTGTGCCTGTGCTGCTTCAAAGTTACTTGTT 9762 47 100.0 30 ............................................... GCTTCGGTATTACGATTAGCCACATCATCG 9839 47 100.0 31 ............................................... CATATCTCGATGTATCGGTAGGCGTTTCTCC 9917 47 100.0 30 ............................................... CAAGTAACGTTACGTATGCGCAAAAGGAAT 9994 47 100.0 31 ............................................... CATTGGCGTAAATATCCTACATATCACTTGA 10072 47 100.0 31 ............................................... CAAGAACTTGCCGCCGAAACAAAGACGCTTT 10150 47 100.0 30 ............................................... CTGTCAATGATACGTTGTATATCTCTGTTG 10227 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 44 47 99.2 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : AATGAAAAGAGGAAAGAGTCATATCAGCACTTGAATGCAGCGTTTGATATGGCTCTTTTATATTTAACAGTTACAATTAGTATTACCGGGCAGCCCCTATTTTAGTTTTGACGCATTCTCTTTTTGCATCTTTACCTTTTGTACCATCACCGACAGAACTCTTTTCTCATTTTACACATCAAAATGATTAATTATGAGCCTTTTTGATAGCATAATAACAGCACTAAAACTTGAACAAATTACTTCCATTAGAATTAGATGTGACTAATTTAAGGTGTATCTACAATTTATTTCCATAAAACCCCACTGTTTTCATCAGAATATATTATCTTTGCATTATCAATTTAAGTGCTCTTTGAAGTAATGCAGAATAAAGAAAGGGTAAGAAACTCGCTCGTTTCCAACTCGTAACCCATTTATCCTTTATTCATTCTTACTCTATTGATTATCTGAAAGATATAAATTTATTGAATCTTTTTTTTGCATAGTCGGCAATGATA # Right flank : CCTCAAATGGCTTAAAGTAATGAGCATCAGTGTTATTACGAAAGCTTAGAGAGAAAGAAAAATGCGAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGTTCTAACTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATGTGTACTTCCATATTTTCTTTACTGCCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTTACAATTCAGGATAAACCATTCTTCTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 4945-6758 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBGT01000010.1 Prevotella intermedia strain ATCC 49046 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4945 36 100.0 30 .................................... ACTAAATCGCTGTAATGTATAGGGTTCGTA 5011 36 100.0 30 .................................... TGCAGAAAGCATCTACAGTTGCCCAGTCGG 5077 36 100.0 30 .................................... ACAGTGTTATTGGTATACCTCTCAAGAGAG 5143 36 100.0 30 .................................... AAGTAAGCTGCAGGATTAGCCTTGACCATA 5209 36 100.0 30 .................................... GGTAGAGGTGTATAACCTTGTTCACTGCGT 5275 36 100.0 30 .................................... TGCATTCGATAAAAGTTGTAAATTCTTCTG 5341 36 100.0 30 .................................... TTTCGATTATGTATATATAATACTCCATCT 5407 36 100.0 30 .................................... GGTTTTATTCTGCGAACTTACGAAGAGCGT 5473 36 100.0 30 .................................... GGCACCGCTTTATTATCGCAAAGGTGCAAA 5539 36 100.0 30 .................................... ATCCTTTCCTTTCACACGATTCGTTCTTGA 5605 36 100.0 29 .................................... AAACGATGTAATGTTAAACACTCTTCCCA 5670 36 100.0 29 .................................... AAAATGCTCCAAAGTTCTTGGCAATGACA 5735 36 100.0 30 .................................... ATTGGAGCTTGGAGAGCGGAAAACGGAAGA 5801 36 100.0 30 .................................... CCTGCACGTAGCCACCCTTTGCGAACTTTG 5867 36 100.0 29 .................................... GCATTCGTTTCCGTTCTTTTTCTATATAC 5932 36 100.0 29 .................................... TATCTTCTATTTTATTTCGAATTAGAGCT 5997 36 100.0 30 .................................... GTCCAAATTCTCTTCTACCAATCCTTTAAA 6063 36 100.0 30 .................................... GGTTTATACTTGTCTAAAATCTTCAGTTCG 6129 36 100.0 30 .................................... TATCGTCTTTGACCTCCGTATTGGCAAGGA 6195 36 100.0 30 .................................... CTAAACCTATGAAATCAAAAGAGCGATTTG 6261 36 100.0 30 .................................... ATCTTGCTCAACAATCCGTCAGCGCAGGGA 6327 36 100.0 30 .................................... TTTTATTTTCGTTGGCATCGTACGCCTTAA 6393 36 100.0 30 .................................... GCTCTGTGATGAGAAACGAAGCTACCAACT 6459 36 100.0 30 .................................... ATTTGTTAGTTTTTCAAGTTGGGTTTGTGT 6525 36 100.0 30 .................................... GTTATTATTTCAGTGTAGTCGCTATCATTG 6591 36 100.0 30 .................................... TGTAATGTCGTCATTTTGAAATCTCCTTTT 6657 36 97.2 30 .....................T.............. TCTTTTCTGTATAGGGTCTTGCGCCCTATC 6723 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.7 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TACGGAATGCCTTTTCGCACAACCAATATCCAATGTACGATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGCTCGATATTGCTGCAAAACTGAAAGAGGAAGTTAGTAAGGCAGCAAAAAAAATACAGAACGAGGAAGATAACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTACACTAATATAAAAAGGGGGCAATGTCGCTGATGTTGAATACAGCAAGCACGCTTATGTGCTGTTGCTTACTGCCAAGGACAAGTCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGAAAAGAAAGCAACAAAATATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : CTTATTAACAAGCAAGGGAATGGAATTGGGAGAGTAGAAAATGGAAGGGGAAACACGCCTTTCTATGAGTGAAAAAAGGCGAGAAAGGTGTAAATAATTTTCACAAGCGAAACTATTGCGTAACTATCTCGCTATCAGCGTATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAAGAGTGGTTTTAAGGCGTGGAAGGTGTAGAGGTTGTGGCGTGGCTTCGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGCAAAGGTGGTTGGGGCTTCTGCATCGGCTCAATTCGGTGGTTCGTTCAGTTGTGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //