Array 1 3367-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000018.1 Thermoanaerobaculum aquaticum strain MP-01 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 3366 29 100.0 32 ............................. GTGCGGATGGTTCGGCCCCGGCTTTTGCCGGC 3305 29 100.0 32 ............................. CATGGCAGCGGCCCTGCAGTGGGGGCGGATTA 3244 29 96.6 31 ............................T TCATCTAGAAAAACACGCGTCGGTTCGCCAA 3184 29 100.0 32 ............................. TGACGATGCGTTTCTCACAGGCGGGGGGAAAT 3123 29 100.0 33 ............................. CCAAAGCGTTACGAGGGGAGGTGAACCGTGAGC 3061 29 100.0 32 ............................. CCAACCGCTCCCCCAGCGGTCATGATAAAAGC 3000 29 100.0 31 ............................. CAAAAGTTGCGGAGGGGACGTACCTGCCTGC 2940 29 100.0 32 ............................. CATCCGGAACAAAGCAAGCGGAAAATAGAAAT 2879 29 100.0 33 ............................. TCGATTTGCAGCGCTTTTCCGTTCTCATAGCTC 2817 29 96.6 32 C............................ AGGTTGCAGAAATGCTTGGCATTTGCATTGAC 2756 29 100.0 32 ............................. TGTGGAGCCGGGCCGATGCTCAGGTGGTGTCC 2695 29 100.0 32 ............................. TCAAGCTGAAGCTCGAGGCGGACCAGCCGGAA 2634 29 96.6 32 ............................T TCGAGCCAGTCGTAGCCGTCAGGCACACGTAC 2573 29 100.0 32 ............................. TAAACAGCCCTTCCAGCCCGGATAAGATCCCG 2512 29 100.0 32 ............................. ATGACCTACGCGCCCTCCGTGCAGCGCCGAAG 2451 29 100.0 32 ............................. GAGCAATGGGTCCAGCTCCTCCCCCTGGGTCA 2390 29 100.0 32 ............................. AGGAGCTCCAAAAGCAGCGCGTCCCTCATGGT 2329 29 100.0 32 ............................. ATTGGGCTAAGGCCGAACGTGTTCTGGTGCGG 2268 29 100.0 32 ............................. GAGCAATGGGTCCAGCTCCTCCCCCTGGGTCA 2207 29 100.0 31 ............................. GCTGGGTGCGGTACTCGGTCCAGGCTATTGC 2147 29 100.0 82 ............................. ATTTCGTCAAGGGAGTCGAACCAGTCCTGCAGGGAGTCCCCACGCACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 2036 29 62.1 32 NNNNNNNNNNN.................. GCCCTGAAAGAGCGCTACCCTGATGAGCCCAC 1975 29 96.6 32 ............................T GTTAGCCTCCTGAGTTCTGGTCTCCGCTGGCC 1914 29 100.0 32 ............................. TGGGTAGGGATGCGTATTGCGCATAGGACCTT 1853 29 100.0 31 ............................. GCTCTTCCAGGCCAACCTGACAGCGCGCAAC 1793 29 100.0 32 ............................. ATCGCGCTTGCGTCCGAGGAGATTGCTGCTGG 1732 29 100.0 32 ............................. ACGCGCGTACCAGCGATGGAACTTGCTCGGTC 1671 29 100.0 32 ............................. TAGGGCTTTCTTGGGGATTCGGGGAAAAAAGG 1610 29 100.0 32 ............................. GGAAGAGCGAATCCGAAGCCAGAAAAGCCGGA 1549 29 100.0 32 ............................. CAGGGGGTGGCTCTTGTTCCTTCTCGATTCTT 1488 29 100.0 32 ............................. CACTCAAGGCGGCAGCACGTGCAACCGGCCTC 1427 29 96.6 32 .........................G... GAACCGAACGCAAGCCCAGCACTTTCGCCGCC 1366 29 100.0 32 ............................. ACGGCCTTCCAGGTTTTTTATCCACTCCTCGC 1305 29 100.0 32 ............................. TGCCGTTATGCGCCACCCACCAACCGCTATGC 1244 29 100.0 32 ............................. CCCCTGGCTAGCCAGCTCAAAGATGCACGGGC 1183 29 100.0 32 ............................. TGCCAATCTGACTCATGGGAATTAACAGTATC 1122 29 100.0 32 ............................. CTCTTGCCGGCGCGAAGCAGCGCGCGCAGCAA 1061 29 100.0 32 ............................. ACGAGCTCCCTCACGGCTCCATCGTGCAGTAT 1000 29 100.0 33 ............................. CGGCGATATCGCCCCAGCGGTCGCGTTACCGAC 938 29 100.0 32 ............................. AGCCGCCGCCCAAATGCCCGCAACTCGATAGC 877 29 100.0 32 ............................. AGCAGGAGGCCGCTGCACTTGCGTCCTTGGAC 816 29 100.0 31 ............................. TAGTAGGGCGTTTAGGCACCCCAGACGATAC 756 29 100.0 32 ............................. AGTTCAAGACATCGAACGCACCGCTGCTTTTG 695 29 100.0 31 ............................. AAACCCCCGCAAGCGCGCGCAGTACGCTTGC 635 29 100.0 32 ............................. CAAAGATCGATGGCATCGTCGCCCTCATTATG 574 29 100.0 32 ............................. CAAACCCCTTCATCTTGGCCGCGCGACTACGC 513 29 100.0 32 ............................. CGCAGCTGCTCAGCCTGAGCGGCTGCCTGCTG 452 29 100.0 32 ............................. AGCTCGCTTGAGTCTGAGCCCACGCAATCCCC 391 29 96.6 32 ............................T AGTGGTTGACAAATTGCGAATCCAGACCGCCA 330 29 100.0 31 ............................. TGCGCACATCACGATCGCGGAGACTGGCCGC 270 29 100.0 32 ............................. AATTTGCTGGTACACCTGCGATACCCGGTCAA 209 29 100.0 32 ............................. CTGCTGCTATAGCCGCCTCGCTGCCCGTTGAG 148 29 96.6 33 ............................T GAGCGAGCAACGGCCTACTAGTGATAGGGATGA 86 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================== ================== 54 29 98.9 33 GGAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GGGGAAGACGAGGTGGAGGACGAAGAACCAAGCCGGCCCGGGGGGCTTTGGGACCTGGAGGGCGAAGTGGAAGGCGGTGTGGCTTATGGTGGTGCTGATCCTGGAGAGGGTACCGAAGAGCCTTCGGGGTGAACTCACCCGCTGGCTCCTGGAACTGGATACCGGTGTGTTCGTGGGGCGGGTGAGTGCCTTGGTGCGGGAGCTTCTTTGGGAGAAGGTTGTGGAGAAAGCAGGGGGCGGCCGCTGCGCGATGGCTTGGGGTACCAACAACGAACAGGGCTTTGCCCTTCGGCTCCACGGCTATGTGGACAGGGTTCCCCGTGACTTTGATGGTCTGGTGCTTGTGGCCGTGCGCAACTCCGAAGCGATAAGAAAAAAGGAGAAGCTTCAGCGGCTTGCCCAACGCTCCCGTTCCGGTGGTGGAGGGTGATATGCGCTTCTCAGGGCCAGCCCGACACATAGAGGCGGGTTAGGGTGGGTTTTTGCAATGGCGACCAAGT # Right flank : GACCAACGCCGGCTCCACAGCCGCCGGGTGGAGGGAGTCCCCACGCACGTGGGGATGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 51-508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000022.1 Thermoanaerobaculum aquaticum strain MP-01 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 51 29 100.0 32 ............................. AAATCTCTGAGGCCAAATATGAGCAGCTCCAG 112 29 100.0 32 ............................. ACCATCGCGGGGCGCAGGATGATAGGCGGCTG 173 29 100.0 31 ............................. GACCCGCAAACCAAAGCGGCGTATAAATTTA 233 29 100.0 32 ............................. GTCGTGGCCACCCCCTTGTGCGCCGCCCGTGC 294 29 100.0 32 ............................. GCGTTGCTGGGCATGGTGGAGGCCATGGAGGC 355 29 100.0 32 ............................. CGAAAAGCCCTCGCCCCGGTGCATGTGCCAGT 416 29 100.0 34 ............................. CGCGAGACCGAGGCCATCATCGAAAAGATGAAGC 479 29 82.8 0 .....................GCA.G..A | C [504] ========== ====== ====== ====== ============================= ================================== ================== 8 29 97.8 32 GGAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GCACGTGGGGATGGACCGACCACATTCATCATGTCGGCTACGGTGCTTTGG # Right flank : ACCTTGACACGCCGGAAGGGCGGGCCTAGTATGCTTTTGGTTCTTTGAAAGCTCACGAAACGTGAGGCATCCGTAGGGGTGCCCCGCACCATTCGCTTCGGTGCGCTGTGCCTGCCAGGGACCGGCCAATAACGGGCTACTGGGGGCATAGCAAGCCGAATGTGCAGAGCGAATGGTGCGGGGCTGAGATCACACCCTTGGAACCTGATCCGGGTCATACCGGCGGAGGGAACGGAGCCGAGGCGCCAAACCACCTCGACCTCTTTTCCCCCGCCTGCCCGGGGGAGGAGGAAACCATGAGAAAGGTTGTTTTGGCGCTTTTTTTGTTGGTCACCACCACCCTCCCGACGGCGGCGGCGGAGCTCAAAGGGCGCGTGCTCGCCAGCGATACCGGCAAACCACTGGCCGGGGCCAAGCTGGAGGTGCGCGAGCTGGGGCTTTCCGCCACCACCGACGGGCAAGGCCAGTTCGTGCTGGAGGTGGGGGCGCAAGCCCAGCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1-2256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000028.1 Thermoanaerobaculum aquaticum strain MP-01 contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================== ================== 1 29 90.6 36 ---............................. TTCAACCTCCGCGTCGAATCCAGCGACTTCGCCCTC 66 32 100.0 33 ................................ CTCCAGGCGTTTGCGTAATAAACTCTCAACCGC 131 32 100.0 35 ................................ AAAGGAGTCCCGAGGTTGTTCCTCTGCCACGTCAA 198 32 100.0 33 ................................ TGATGTCCTTGAACGTGCCGACAGGGAGCTCTA 263 32 100.0 36 ................................ CCGGAGCTGGAAGAGCTTGATGCGGTAGCGGAAAAG 331 32 100.0 33 ................................ TCCTGTCTCCGTCTGAAGGCTGATTTCGCCCCG 396 32 100.0 35 ................................ TTTGCCGGTGTTGGAGACCGCTGTAACGGTGACCA 463 32 100.0 62 ................................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAT 557 32 100.0 33 ................................ AAACTGCGTTGAATCGTAAGTGCCAGAAAACGC 622 32 100.0 34 ................................ TCACCATCAGTAAAAAGCGGGCTAAGGCTCCCAT 688 32 96.9 35 ..G............................. TCGAGAGCCTGGCGCTGCACCTCAGGGTGTGTCTT 755 32 100.0 34 ................................ ACGTAAAAGCCTACATGTCAGGACGGAAGACGGC 821 32 100.0 34 ................................ CTGAACACCAAAAAGGACCGCCGGGCGCGGCTTG 887 32 100.0 34 ................................ CAAATCCAGCACCACGCCTCCCACCACGAGCGTC 953 32 100.0 34 ................................ TGGACCCCGGCGGTTGGGTCGAGGTGGTTGGCAC 1019 32 100.0 34 ................................ CAAAGAGCTTAGCGAACCACATGTGTCGCCCTCC 1085 32 100.0 33 ................................ GCTGCAGCCTCCCAAAACGCCTCCGGGCTTGTT 1150 32 100.0 35 ................................ GCGGCGACCTGCCGACCGGCTCCCGACGCCCTCCC 1217 32 100.0 35 ................................ GCCGGATGGCAGGCTAAGCGCGGGGAGTTACTCTC 1284 32 100.0 35 ................................ GAGAATGGGAGGCTATCCGATGGCACCGGTCGGTG 1351 32 100.0 37 ................................ CACGATCGTGCGAGCTGCGTGAGCCAGCATCACGAGC 1420 32 100.0 34 ................................ ATCGGAAGCGCTAAATGACGTTTGGCGGCAAATG 1486 32 100.0 35 ................................ CCCGTGTGGGACGCGGAGGAGGTCCCCGTCGGCAC 1553 32 100.0 36 ................................ TTGCGAGAGCTTGGAATTGAAGACAAAAAGAAAGGG 1621 32 100.0 35 ................................ GTGATATGCTGCAATTTTTCTAACAATTTGCTCGT 1688 32 100.0 33 ................................ ACTACAAGAATTCCGAAAATCGGGGAAGTGTTG 1753 32 100.0 34 ................................ CATTGTGTGTGGTTAGGCCACCTAAAACCCACAT 1819 32 100.0 34 ................................ ATCGCCATATTCTAACGGACGCAGGACCTCAACA 1885 32 100.0 38 ................................ AGTGACCGCTGCAGCGTCATCATCATCGTCAGCGGCAA 1955 32 100.0 36 ................................ CCCGATTGAAGCTGAGTTTTGCAGCGTTGAAAAGGA 2023 32 100.0 34 ................................ GCCACCGGCGCCAGATCACAGGCCCTGCGCTGTC 2089 32 100.0 36 ................................ GCACCCAAAACGCGCTGGGCGGTGCTCAACACGCAG 2157 32 100.0 36 ................................ TTTCCATCATGAACAGTCCATTCCCAACCTTTTCTA 2225 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================================== ================== 34 32 99.6 36 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CGCACCCAAAACGCGCTGGGCGGTGCTCAACACGCAGGTCGCGCCCCGCGCGGGNNNNNNNNNNNNNNNCGCGTGGATTGAAACAACATTGCGCTCGCGGATTAGAAACAGCGACCGCGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACGTCTCGGTGCCATCAGTGATGACACGCACCATAGTCGCGCCCCGCGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNGCGCGTGGATTGAAACCCGCGTCTGATCGGGCGGGGGTGTACCGCCACCTATCGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACCCGTCTGCTGGCGGCGCAAATGCCACATCAACCCGGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACAGCAACGGCTGTGTGTAATCTCTTTAGCTCATCTGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACAGCTCGCCACCAGGTTGTGTCTGGAGTACCAGAAGTCGCGCCCCGCGCGGGCGCGTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2374-3361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000028.1 Thermoanaerobaculum aquaticum strain MP-01 contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================== ================== 2374 32 100.0 33 ................................ GTCTCGGTGCCATCAGTGATGACACGCACCATA 2439 32 53.1 63 .................NNNNNNNNNNNNNNN NNNNNNNNNNGCGCGTGGATTGAAACCCGCGTCTGATCGGGCGGGGGTGTACCGCCACCTATC 2534 32 100.0 35 ................................ CCGTCTGCTGGCGGCGCAAATGCCACATCAACCCG 2601 32 100.0 34 ................................ AGCAACGGCTGTGTGTAATCTCTTTAGCTCATCT 2667 32 100.0 34 ................................ AGCTCGCCACCAGGTTGTGTCTGGAGTACCAGAA 2733 32 100.0 34 ................................ CCAGCGGAGGGCTGGGTGCAGGATGACGGGACGG 2799 32 100.0 38 ................................ TTCCAATGGCGTCCCCGCGCGATTGCCCAAGACCAATG 2869 32 100.0 34 ................................ TCAAGGCTGGCGGCCTGCTCATTACAAACCTTGT 2935 32 100.0 33 ................................ CTGCGCCCTGACCGCTACGTGCTCTACCGGCGA 3000 32 100.0 34 ................................ TTAAATCTAGACAAAAAGTCCGCAACTAACGCAC 3066 32 100.0 34 ................................ AACATCCGGAAACAAACCTTGAAGTTGATGCCTT 3132 32 100.0 35 ................................ TAAAAGCGGGTGGTACTGAAGAAATTGCAGAGTAC 3199 32 100.0 34 ................................ CGGCCCAACTTGTGATCGCTGCGAGGGAGCGCGC 3265 32 100.0 33 ................................ TTCTTAGGATAAAGGGGAGGTATGTCATGACTG 3330 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =============================================================== ================== 15 32 96.9 36 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : GGACCTCAACAGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACAGTGACCGCTGCAGCGTCATCATCATCGTCAGCGGCAAGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACCCCGATTGAAGCTGAGTTTTGCAGCGTTGAAAAGGAGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACGCCACCGGCGCCAGATCACAGGCCCTGCGCTGTCGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACGCACCCAAAACGCGCTGGGCGGTGCTCAACACGCAGGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACTTTCCATCATGAACAGTCCATTCCCAACCTTTTCTAGTCGCGCCCCGCGCGGGCGCGTGGATTGAAACGCACCCAAAACGCGCTGGGCGGTGCTCAACACGCAGGTCGCGCCCCGCGCGGGNNNNNNNNNNNNNNNCGCGTGGATTGAAACAACATTGCGCTCGCGGATTAGAAACAGCGACCGC # Right flank : GTTAGTCCAAGCGTCTCGCCGTTCTGCCAGCAGGTCGGTCGCGCCCCGCGCGGGC # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 41445-40308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000037.1 Thermoanaerobaculum aquaticum strain MP-01 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================== ================== 41444 29 90.6 34 ---............................. CGCGCTCGCGATCGGTGTACACGCGAATCTTGAT 41381 32 100.0 35 ................................ CTTCGGCGCAGCTGCTCCCCCAGCAAGCGAGACCC 41314 32 100.0 34 ................................ TACCGGTAGCATGGTGGCCTCCCTGTCATAGCTG 41248 32 100.0 35 ................................ CGTCCCCTCAACCCCGAGGAGGCGCGGGCGCTGCT 41181 32 100.0 34 ................................ GACCGCATCCAGGGCCGGAACCACTACTGCTGGG 41115 32 100.0 34 ................................ GGGAGCTTGTGGAGGATGAAGCCCCTGGTGTCTC 41049 32 100.0 35 ................................ CGACTTCGCACGGTCAAACAGCTTTATGACGTCCA 40982 32 100.0 34 ................................ GCTCGTCCGACTGCTCGGCGACACAACGATCCTG 40916 32 100.0 35 ................................ GCGGCTGGGAGCGGCTCGACGGTACACTGACCGTC 40849 32 100.0 35 ................................ GCAGGGTCGTGTCCCCGGCGATGTACTGGCCCGTG 40782 32 100.0 35 ................................ TGCGCGGCGTTGCTGTCCAGGTAAAGGGCGCCGCC 40715 32 100.0 34 ................................ TAGGGAGGCCATCAGACTGACTCTCGACCTGTCG 40649 32 100.0 78 ................................ TCAAGCCCCTTTTCGGCCTCAGCCCCCTCATACCGTCGCGCCCCGCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 40539 32 56.2 34 NNNNNNNNNNNNNN.................. TACCGGCCTCGAACGCCTTTTTGAGCGTGTTGAG 40473 32 100.0 34 ................................ TTGGCCGCTGGCGATATACACCTATAAACACCTA 40407 32 100.0 36 ................................ TCGTCATACTGCTGGCGGGCCAGGTCCCCTATCTGC 40339 32 78.1 0 .....................C..G..TGTGG | ========== ====== ====== ====== ================================ ============================================================================== ================== 17 32 95.6 37 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : AAGGGGCGACCAAGCGCTCGCCCCTGATGATGTTCGCAGCTCGAAGCTAGAGAGGAAAGACGTTAAAGAAGCTAAAGAAACTAAAGAAGTTGGATTAAAAGCTCTTTTGGGTGGGTCATCGGTTTTTCCGAGCTCAATGGAGGTCGAGCAGCGGTTTCCTAAACCGCGTGTCCTGGTAGGCGATTTCCTCCGTGTGCGGGGGTTAGGCAGGGCGGTTGGATGGGATCGGCATGGAATGGGAGTGCATCGCGGGGCAAGGGTGTCGGTTGCGGCCGAGCTGGGCCGGAGGAGACGGGCGAAGGGAAGGGCCTTGACAGGGTTGCGGGTGGCGGGGTACAGTCGTGGCGTGATGAACGCGATGGGTTACCGCACCTACGGCCATTGGTACTGGTTCCACACGCCAGAGCGGCGTTAGGGCGGAAAACCCCGCTCGCGCCGCGTGGCCGAGCGGGGACCTTGGGAAGAACACAACCACCTCCCCGCCGGCAGCGGCGGGGAGG # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 948-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000047.1 Thermoanaerobaculum aquaticum strain MP-01 contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 947 32 100.0 34 ................................ AGAATAAATCAAACTCAGGCTCCGTTACTAGCTC 881 32 100.0 34 ................................ AAAGTGACGTTGCGAAAACACTCGCAGGCGTACC 815 32 100.0 33 ................................ GAGGATTGATTGCGCGGCAACAAAGGAGGTCTG 750 32 100.0 34 ................................ TCCGCCAGCTCCACGCGTAGCTGCTCGGCTTCCA 684 32 100.0 36 ................................ ATGAAATGCTCATATCAGACAGAGCAAAAACCCCTG 616 32 100.0 34 ................................ AGCATCTCCAGCGCCCAGTGCGGGTTGATTTGTC 550 32 100.0 34 ................................ AGAATAAATCAAACTCAGGCTCCGTTACTAGCTC 484 32 100.0 34 ................................ ACATCGCCGGGGCTTTGGATATCGAGGACTACTA 418 32 100.0 36 ................................ TGGATGTGCGGTCTGGGGGAGCACACTGCTGCTGTC 350 32 100.0 35 ................................ TCGCTTGGGATTTTGAGGCAAGCACAACACGTCCA 283 32 100.0 34 ................................ GACCGTTGCTGAAACTAGTGTCAGTTGCGGTAAC 217 32 100.0 34 ................................ AACGCAGCGCAAAGCAGATGGGAAGCCATGGCTC 151 32 100.0 34 ................................ CACCTCATACTATAGGGCGTCACCAGGCGCTTGG 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 100.0 34 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : GGCGCGTGGATTGAAACTGCCCCGTTTTAAGGTTAACCACCCACTGCTCC # Right flank : CAGAGCCGCGGCAGCTCGGCTTGGGACCCAGGAAATGTCGCGCCCCGCGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 946-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000058.1 Thermoanaerobaculum aquaticum strain MP-01 contig_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 945 29 90.6 33 ---............................. CGTGCCTGATGATGGTGCCTCCCGCGGCATCCG 883 32 100.0 35 ................................ TGTAGTCATGCTTGCGAAATTGTCGAGCGTATAGC 816 32 100.0 36 ................................ CAGCGGTTTATCGTCAGGGGTAATTGCTGGCAAGAT 748 32 100.0 34 ................................ CCAAGCAGCCCCTCCCAAAAGCGGGTCGTAGCGG 682 32 100.0 35 ................................ GTGGAGCCAATCAGCGGGGTCCACGCGTTTGGCAC 615 32 100.0 34 ................................ AAGGCGTTGCCCCCCGGGGCCGGTATGCTTACAG 549 32 100.0 35 ................................ CGCGGCGACGGCTGTCAACCAGCTGGCTGACGCGG 482 32 100.0 34 ................................ TCATCCAGGTCTTTGCTGGCGGCGGCGTGCAGGA 416 32 100.0 35 ................................ TTGAGGAACGCGTCCAAAACAATGCCCTCAATCCG 349 32 100.0 35 ................................ TCCTCAGAAAGCCCGCAAAACGGCGCCCGTCACAT 282 32 100.0 34 ................................ CGGACTCCTTTGACGTCCACCTCGAAAGTGCCTT 216 32 100.0 34 ................................ TCTCAGTGAGCGGTGAAGATGCGGCTGCGAACCT 150 32 100.0 35 ................................ TCCAGAATCCCAAAAAGCAGCCTTACTTGCCTCCA 83 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 35 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CCTGAGGCTTGCCGGCTGCAATCTGGACTGCTCCTGTCGCGCCCCGCGCGGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54-762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMFG01000059.1 Thermoanaerobaculum aquaticum strain MP-01 contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 54 37 100.0 38 ..................................... TCCACGGGCCGGTCATCGCCCTGTGGCCAGCCAGGCTG 129 37 100.0 38 ..................................... AGCCATAGACGTTTCCTCCTTTTCTGGCGATTTGTGGC 204 37 100.0 38 ..................................... GAACGATGCGGGCCACTTCCGCCCGCTCGCGCTCTGCC 279 37 100.0 39 ..................................... CAAGGCGAAGATGGGCTTCCGCGTTCGGCAGCCCCGCCC 355 37 100.0 36 ..................................... TGCCCAGAGCGGGACGTTGGTATGGGTTGGGGTTAC 428 37 100.0 38 ..................................... GCCAGCTCCAGCCCGCCCGCAGCCCCGAGCACGAACAC 503 37 100.0 39 ..................................... TAAGCTCGCCATTAACAAGCTTGACGAGCCTGTCTCGGA 579 37 100.0 38 ..................................... CCCCGCAAACGCGGGGGCCTTGCGATCACCGAACCTCG 654 37 100.0 35 ..................................... TGCGAGCCAAAGACGACCTTGAAGGTGTCATTCGA 726 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 100.0 38 GTAGGAATCACCGCCTCGCTTAAAAGAGGATTACGAC # Left flank : TTAAAAGAGGATTACGACTACCTCTCGTGAACCCACTGGGTAACGCCAAGCTCG # Right flank : CCTGGTAGAGCGTTCATCACATACATCATTTTTTGACGTAGGAATCACCGCCTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAATCACCGCCTCGCTTAAAAGAGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //